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config.yaml
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# A tutorial for running ACCESS ESM1.5 can be found at
# https://access-hive.org.au/models/run-a-model/run-access-esm
# Full details about the payu configuration settings are available at
# https://payu.readthedocs.io/en/latest/config.html
# PBS configuration
# If submitting to a different project to your default, uncomment line below
# and replace PROJECT_CODE with appropriate code. This may require setting shortpath
# project: PROJECT_CODE
# Force payu to always find, and save, files in this scratch project directory
# shortpath: /scratch/PROJECT_CODE
# Note: if laboratory is relative path, it is relative to shortpath/$USER
laboratory: access-esm
jobname: Nov25-Old-Nitrogen
queue: normalsr
walltime: 2:30:00
jobfs: 1500MB
platform:
nodesize: 104
nodemem: 512
# Modules for loading model executables
modules:
use:
- /g/data/vk83/modules
load:
- access-esm1p6/2025.11.002
# Model configuration
model: access-esm1.6
submodels:
- name: atmosphere
model: um
ncpus: 256
exe: um_hg3.exe
input:
# Aerosols
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/OCFF_1850_cmip7.anc
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/BC_1850_cmip7.anc
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/scycl_1850_cmip7.anc
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/Bio_1850_cmip7.anc
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
# Forcing
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/global.N96/2020.05.19/ozone_1850_ESM1.anc
# Land
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/vegetation/global.N96/2025.08.29/cable_vegfunc_N96.anc
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.08.29/modis_phenology_csiro_13evergreen.txt
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.11.18/pftlookup_cable3_OctB_update.csv
# Spectral
- /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
- /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
# Grids
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
- /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
# STASH
- /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/
- name: ocean
model: mom
ncpus: 240
exe: mom5_access_cm
input:
# Biogeochemistry
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/biogeochemistry/global.1deg/2025.09.22/SFe_Hamiltonetal2020_monthly_clim.nc
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
# Tides
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
# Shortwave
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc
# Grids
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/grid_spec.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_mosaic.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_hgrid.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/bathymetry/global.1deg/2025.07.29/topog.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/vertical/global.1deg/2025.07.29/ocean_vgrid.nc
- name: ice
model: cice5
ncpus: 12
exe: cice_access-esm1.6_360x300_12x1_12p.exe
input:
# Grids
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/kmt.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/grid.nc
# Iceberg flux
- /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/share/ice/iceberg/global.1deg/2025.09.16/lice_discharge_iceberg.nc
- name: coupler
model: oasis
ncpus: 0
input:
# Grids
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/grids.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/areas.nc
- /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
# Remapping weights
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
- /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
# Collation
collate:
enable: false
restart: /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/restart/2025.11.20
# Timing controls
calendar:
runtime:
years: 1
months: 0
days: 0
runspersub: 1
# Misc
restart_freq: 10YS
runlog: true
manifest:
reproduce:
exe: true
input: true
restart: true
stacksize: unlimited
qsub_flags: -W umask=027
mpi:
flags:
- --mca mpi_yield_when_idle true
payu_minimum_version: 1.2.0
# Sync options for automatically copying data from ephemeral scratch space to
# longer term storage
sync:
enable: False # set path below and change to true
restarts: True
path: null # Set to location on /g/data or a remote server and path (rsync syntax)
# If a postscript included (such as the automated netcdf conversion), the latest output and restart files will not
# be automatically synced at the end of a run. To sync the latest output after a postscript has completed,
# manually run `payu sync` from the command line.
# userscripts:
postscript: -v PAYU_CURRENT_OUTPUT_DIR,PROJECT -lstorage=${PBS_NCI_STORAGE} ./scripts/NetCDF-conversion/UM_conversion_job.sh