diff --git a/config.yaml b/config.yaml index dc6b6b95..4df673e6 100644 --- a/config.yaml +++ b/config.yaml @@ -1,162 +1,102 @@ -# A tutorial for running ACCESS ESM1.5 can be found at -# https://access-hive.org.au/models/run-a-model/run-access-esm -# Full details about the payu configuration settings are available at -# https://payu.readthedocs.io/en/latest/config.html - - -# PBS configuration - -# If submitting to a different project to your default, uncomment line below -# and replace PROJECT_CODE with appropriate code. This may require setting shortpath -# project: PROJECT_CODE - -# Force payu to always find, and save, files in this scratch project directory -# shortpath: /scratch/PROJECT_CODE - -# Note: if laboratory is relative path, it is relative to shortpath/$USER -laboratory: access-esm - -jobname: 4xCO2 -queue: normalsr -walltime: 2:30:00 -jobfs: 1500MB - -platform: - nodesize: 104 - nodemem: 512 - -# Modules for loading model executables -modules: - use: - - /g/data/vk83/modules - load: - - access-esm1p6/2026.01.000 - -# Model configuration -model: access-esm1.6 - -submodels: - - name: atmosphere - model: um - ncpus: 256 - exe: um_hg3.exe - input: - # Aerosols - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/OCFF_1850_cmip7.anc - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/BC_1850_cmip7.anc - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/scycl_1850_cmip7.anc - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/Bio_1850_cmip7.anc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38 - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38 - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96 - # Forcing - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/forcing/global.N96/2025.12.09/ozone_1850_cmip7.anc - # Land - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2025.11.18/Ndep_1850_cmip7.anc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/vegetation/global.N96/2025.08.29/cable_vegfunc_N96.anc - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.08.29/modis_phenology_csiro_13evergreen.txt - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.11.18/pftlookup_cable3_OctB_update.csv - # Spectral - - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on - - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on - # Grids - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask - - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3 - # STASH - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/stash/2026.01.21/ - - - name: ocean - model: mom - ncpus: 240 - exe: mom5_access_cm - input: - # Biogeochemistry - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/biogeochemistry/global.1deg/2025.09.22/SFe_Hamiltonetal2020_monthly_clim.nc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc - # Tides - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc - # Shortwave - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc - # Grids - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/grid_spec.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_mosaic.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_hgrid.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/bathymetry/global.1deg/2025.07.29/topog.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/vertical/global.1deg/2025.07.29/ocean_vgrid.nc - - - name: ice - model: cice5 - ncpus: 12 - exe: cice_access_360x300_30x300.exe - input: - # Grids - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/kmt.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/grid.nc - # Iceberg flux - - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/share/ice/iceberg/global.1deg/2025.09.16/lice_discharge_iceberg.nc - - - name: coupler - model: oasis - ncpus: 0 - input: - # Grids - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/grids.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/areas.nc - - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc - # Remapping weights - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_DESTAREA.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc - - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc - -# Collation -collate: - enable: false - -restart: /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/restart/2025.12.22 - -# Timing controls calendar: - runtime: - years: 1 - months: 0 - days: 0 - -runspersub: 1 - -# Misc -restart_freq: 10YS - -runlog: true + runtime: + days: 0 + months: 0 + years: 1 +collate: + enable: false +jobfs: 1500MB +jobname: 4xCO2 +laboratory: access-esm manifest: reproduce: - exe: true + exe: false input: true - - -stacksize: unlimited -qsub_flags: -W umask=027 +model: access-esm1.6 +modules: + load: + - access-esm1p6/pr168-3 + use: + - /g/data/vk83/modules + - /g/data/vk83/prerelease/modules mpi: flags: - - --mca mpi_yield_when_idle true + - --mca mpi_yield_when_idle true payu_minimum_version: 1.2.0 - -# Sync options for automatically copying data from ephemeral scratch space to -# longer term storage -sync: - enable: False # set path below and change to true - restarts: True - path: null # Set to location on /g/data or a remote server and path (rsync syntax) - -# If a postscript included (such as the automated netcdf conversion), the latest output and restart files will not -# be automatically synced at the end of a run. To sync the latest output after a postscript has completed, -# manually run `payu sync` from the command line. - -# userscripts: - +platform: + nodemem: 512 + nodesize: 104 postscript: -v PAYU_CURRENT_OUTPUT_DIR,PROJECT -lstorage=${PBS_NCI_STORAGE} ./scripts/NetCDF-conversion/UM_conversion_job.sh +qsub_flags: -W umask=027 +queue: normalsr +restart: /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/restart/2025.12.22 +restart_freq: 10YS +runlog: true +runspersub: 1 +stacksize: unlimited +submodels: +- exe: um_hg3.exe + input: + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/OCFF_1850_cmip7.anc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/BC_1850_cmip7.anc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/scycl_1850_cmip7.anc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/aerosol/global.N96/2025.06.04/Bio_1850_cmip7.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38 + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38 + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96 + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/forcing/global.N96/2025.12.09/ozone_1850_cmip7.anc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2025.11.18/Ndep_1850_cmip7.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/vegetation/global.N96/2025.08.29/cable_vegfunc_N96.anc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.08.29/modis_phenology_csiro_13evergreen.txt + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/land/biogeochemistry/resolution_independent/2025.11.18/pftlookup_cable3_OctB_update.csv + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3 + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/share/atmosphere/stash/2026.01.21/ + model: um + name: atmosphere + ncpus: 256 +- exe: mom5_access_cm + input: + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/biogeochemistry/global.1deg/2025.09.22/SFe_Hamiltonetal2020_monthly_clim.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/grid_spec.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_mosaic.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/mosaic/global.1deg/2025.07.29/ocean_hgrid.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/bathymetry/global.1deg/2025.07.29/topog.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ocean/grids/vertical/global.1deg/2025.07.29/ocean_vgrid.nc + model: mom + name: ocean + ncpus: 240 +- exe: cice_access_360x300_30x300.exe + input: + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/kmt.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/ice/grids/global.1deg/2025.07.29/grid.nc + - /g/data/vk83/prerelease/configurations/inputs/access-esm1p6/modern/share/ice/iceberg/global.1deg/2025.09.16/lice_discharge_iceberg.nc + model: cice5 + name: ice + ncpus: 12 +- input: + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/grids.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/grids/global.oi_1deg.a_N96/2025.07.29/areas.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_DESTAREA.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p6/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2025.08.06/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc + model: oasis + name: coupler + ncpus: 0 +sync: + enable: false + path: null + restarts: true +walltime: 9000