tool_and_resource_list.yml

- id: mypy
  name: mypy
  description: >-
    Mypy is an optional static type checker for Python that aims to combine the
    benefits of dynamic typing and static typing
  url: 'https://mypy-lang.org/'
  catalog: TechRadar
- id: spdx
  name: SPDX
  description: >-
    System Package Data Exchange (SPDX) is an open standard for representing
    systems with software components as SBOMs (Software Bill of Materials) and
    other AI, data and security references supporting a range of risk management
    use cases.
  url: 'https://spdx.org/licenses/'
  catalog: RSQKit
- id: choosealicense
  name: Choose an open source license
  description: >-
    Choose an open catalog license is a tool to help you choose an open source
    license for your software. An open source license protects contributors,
    users and developers.
  url: 'https://choosealicense.com/'
  catalog: TechRadar
- id: bash
  name: Bash
  description: >-
    Bash, which stands for - Bourne Again SHell, is a command-line interface and
    scripting language commonly used in Unix and Unix-like operating systems. It
    provides a powerful environment for executing commands, managing files, and
    automating tasks through scripts.
  url: 'https://www.gnu.org/software/bash/'
  catalog: RSQKit
- id: powershell
  name: PowerShell
  description: >-
    PowerShell is a Microsoft task automation and configuration management
    framework, featuring a command-line shell and a scripting language. It is
    designed to help system administrators and power users control and automate
    the administration of Windows and other Microsoft technologies.
  url: 'https://learn.microsoft.com/en-gb/powershell/'
  catalog: RSQKit
- id: opencl
  name: OpenCL
  description: >-
    OpenCL (Open Computing Language) is an open standard for parallel
    programming across various platforms, including CPUs, GPUs, and other
    processors. It enables developers to write programs that execute across
    heterogeneous computing systems, allowing for high-performance computing in
    applications like scientific simulations, image processing, and machine
    learning.
  url: 'https://www.khronos.org/opencl/'
  catalog: RSQKit
- id: cuda
  name: CUDA
  description: >-
    CUDA (Compute Unified Device Architecture) is NVIDIA's parallel computing
    platform and programming model that enables developers to use
    GPU-accelerated computing for general-purpose processing. It provides a
    software layer that gives direct access to the GPU's virtual instruction set
    and parallel computational elements, allowing dramatic performance increases
    for compute-intensive applications.
  url: 'https://developer.nvidia.com/cuda-zone'
  catalog: RSQKit
- id: rust
  name: Rust
  description: >-
    Rust is a systems programming language focused on memory safety,
    concurrency, and performance without using garbage collection, enforcing
    memory safety through its unique ownership system and borrowing rules. It
    combines low-level control with high-level abstractions, making it suitable
    for everything from operating systems to WebAssembly applications.
  url: 'https://www.rust-lang.org/'
  catalog: RSQKit
- id: julia
  name: Julia
  description: >-
    Julia is a high-performance programming language designed for numerical and
    scientific computing that combines the speed of C with the ease of use of
    Python. It features multiple dispatch, optional typing, and excellent
    parallel processing capabilities, making it particularly strong for
    mathematical computations, data science, and machine learning applications.
  url: 'https://julialang.org/'
  catalog: RSQKit
- id: r
  name: R
  description: >-
    R is a programming language and environment designed for statistical
    computing and graphics, widely used by data scientists, statisticians, and
    researchers. Known for its extensive libraries and rich visualization
    capabilities, R excels in data analysis, modelling, and reproducible
    research.
  url: 'https://www.r-project.org/'
  catalog: RSQKit
- id: typescript
  name: TypeScript
  description: >-
    TypeScript is a strongly typed superset of JavaScript that adds static
    typing and advanced tooling capabilities, enhancing code quality and
    developer productivity. Designed for building scalable applications,
    TypeScript compiles to plain JavaScript, ensuring compatibility with
    existing JavaScript environments.
  url: 'https://www.typescriptlang.org/'
  catalog: RSQKit
- id: javascript
  name: JavaScript
  description: >-
    JavaScript is a lightweight, high-level programming language primarily used
    to create interactive and dynamic content on web pages, running seamlessly
    in browsers. Known for its versatility, JavaScript supports event-driven,
    functional, and object-oriented programming, making it essential for modern
    web development and widely used alongside HTML and CSS.
  url: 'https://developer.mozilla.org/en-US/docs/Web/JavaScript'
  catalog: RSQKit
- id: cpp
  name: C++
  description: >-
    C++ is a high-performance, general-purpose programming language that
    supports both procedural and object-oriented paradigms, offering
    fine-grained control over system resources. Known for its versatility and
    efficiency, C++ is widely used in applications requiring high speed and
    precision, such as game development, operating systems, and real-time
    simulations.
  url: 'https://isocpp.org/'
  catalog: RSQKit
- id: python
  name: Python
  description: >-
    Python is an interpreted, high-level, object-oriented programming language
    known for its dynamic typing, readability, and extensive standard library,
    making it ideal for rapid development and modular, reusable code.
  url: 'https://www.python.org/'
  catalog: RSQKit
- id: java
  name: Java
  description: >-
    Java is a versatile, object-oriented programming language designed to be
    platform-independent, with its “write once, run anywhere” capability enabled
    by the Java Virtual Machine (JVM).
  url: 'https://www.java.com/en/'
  catalog: RSQKit
- id: docker
  name: Docker
  description: >-
    Docker is a tool for creating isolated environments (application isolation)
    for software development called containers to enable consistent software
    running across platforms.  Docker allows developers to build, share, run and
    verify applications easily. DockerHub is a repository for sharing and
    managing container images.
  url: 'https://www.docker.com/'
  catalog: TechRadar
  registry: null
- id: docker-compose
  name: Docker Compose
  description: >-
    Docker Compose is a tool for defining and running multi-container
    applications for streamlined and efficient development and deployment
    experience.
  url: 'https://docs.docker.com/compose/'
  catalog: TechRadar
- id: howfairis
  name: howfairis
  description: >-
    Howfariris is a command line tool to analyze a GitHub or GitLab repository's
    compliance with the EU FAIR software recommendations.
  url: 'https://github.com/fair-software/howfairis'
  catalog: TechRadar
- id: github
  name: GitHub
  description: >-
    GitHub is a platform that allows developers to create, store, manage, and
    share their code. It uses Git to provide distributed version control. GitHub
    provides access control, bug tracking, software feature requests, task
    management, continuous integration, and wikis for every project.
  url: 'https://github.com/'
  catalog: RSQKit
- id: zenodo
  name: Zenodo
  description: >-
    Zenodo is a general-purpose open repository developed under the European
    OpenAIRE program and operated by CERN. It allows researchers to deposit
    research papers, data sets, research software, reports, and other
    research-related digital artefacts.
  url: 'https://zenodo.org/'
  catalog: TechRadar
- id: figshare
  name: FigShare
  description: >-
    Figshare is a provider of open research repository infrastructure for
    sharing, showcasing and managing all research outputs in a discoverable,
    citable, reportable and transparent way.
  url: 'https://figshare.com/'
  catalog: RSQKit
- id: vscode
  name: Visual Studio Code
  description: >-
    Visual Studio Code, commonly referred to as VS Code, is an Integrated
    Development Environment (IDE) developed by Microsoft that includes support
    for debugging, syntax highlighting, intelligent code completion, snippets,
    code refactoring, and embedded version control with Git.
  url: 'https://code.visualstudio.com/'
  catalog: TechRadar
- id: intellij-idea
  name: IntelliJ IDEA
  description: Integrated development environment (IDE) written in Java.
  url: 'https://www.jetbrains.com/fr-fr/idea/'
  catalog: TechRadar
- id: poetry
  name: Poetry
  description: Python packaging and dependency management tool
  url: 'https://python-poetry.org/'
  catalog: TechRadar
- id: pypi
  name: Python Package Index (PyPi)
  description: Official third-party software repository for Python packages
  url: 'https://pypi.org/'
  catalog: TechRadar
- id: eossr
  name: eOSSR
  description: >-
    Python library to programmatically manage the ESCAPE OSSR; also includes a
    CodeMeta generator and validator
  url: 'https://gitlab.com/escape-ossr/eossr'
  catalog: TechRadar
- id: chatgpt
  name: ChatGPT
  description: >-
    Generative artificial intelligence chatbot developed by OpenAI and able to
    produce code or answer questions on code
  url: 'https://chatgpt.com/'
  catalog: TechRadar
- id: javadoc
  name: JavaDoc
  description: >-
    Documentation generator for Java used to generate API documentation in HTML
    format from Java source code
  url: 'https://www.oracle.com/java/technologies/javase/javadoc-tool.html'
  catalog: TechRadar
- id: hugo
  name: Hugo
  description: Static website generation based on Go
  url: 'https://gohugo.io/'
  catalog: TechRadar
- id: pelican
  name: Pelican
  description: Static website generation based on Python
  url: 'https://getpelican.com/'
  catalog: TechRadar
- id: gitlab-pages
  name: GitLab Pages
  description: >-
    A GitLab tool that publishes static websites directly from a GitLab
    repository
  url: 'https://docs.gitlab.com/ee/user/project/pages/'
  catalog: TechRadar
- id: github-pages
  name: GitHub Pages
  description: Publish static websites directly from GitHub repository
  url: 'https://pages.github.com/'
  catalog: TechRadar
- id: github_actions
  name: GitHub Actions
  description: 'GitHub''s infrastructure for continuous integration, deployment and delivery'
  url: 'https://github.com/features/actions'
  catalog: TechRadar
- id: gitlab-cicd
  name: GitLab CI/CD
  description: 'GitLab''s infrastructure for continuous integration, deployment and delivery'
  url: 'https://docs.gitlab.com/ee/topics/build_your_application.html'
  catalog: TechRadar
- id: bandit
  name: Bandit
  description: Bandit is a tool designed to find common security issues in Python code.
  url: 'https://github.com/PyCQA/bandit'
  catalog: TechRadar
- id: playwrite
  name: Playwrite
  description: >-
    Framework for Web testing and automation, allowing testing using Chromium,
    Firefox and WebKit with a single API
  url: 'https://playwright.dev/docs/intro'
  catalog: TechRadar
- id: scorep
  name: Score-P
  description: >-
    The Score-P (Scalable Performance Measurement Infrastructure for Parallel
    Codes) measurement infrastructure is a highly scalable and easy-to-use tool
    suite for profiling and event trace recording of HPC applications.
  url: 'https://gitlab.com/score-p/scorep'
  catalog: TechRadar
- id: fuji
  name: F-UJI
  description: >-
    Original version for automated assessment of data FAIRness; extended version
    (POC only - not all metrics are implemented) for research software based on
    the FAIR4RS principles.
  url: 'https://github.com/softwaresaved/fuji/'
  catalog: TechRadar
- id: bearer
  name: Bearer
  description: >-
    Bearer CLI is a static application security testing (SAST) tool that scans
    your source code and analyzes your data flows to discover, filter and
    prioritize security and privacy risks.
  url: 'https://github.com/bearer/bearer'
  catalog: TechRadar
- id: hermes-workflow
  name: Hermes Workflows
  description: >-
    The HERMES workflow enables automated publication of rich research software
    metadata and artifacts to publication repositories using open source
    tooling.
  url: 'https://docs.software-metadata.pub/en/latest/'
  catalog: TechRadar
- id: cffinit
  name: CFFINIT Generator
  description: >-
    Generate software citation metadata files with ease. CITATION.cff files are
    plain text files with human- and machine-readable citation information for
    software (and datasets).
  url: 'https://citation-file-format.github.io/cff-initializer-javascript/#/'
  catalog: TechRadar
- id: codemeta-generator
  name: CodeMeta Generator
  description: >-
    A free, open-source project that creates a minimal metadata schema for
    research software and code
  url: 'https://codemeta.github.io/codemeta-generator'
  catalog: TechRadar
- id: codemeta
  name: CodeMeta
  description: >-
    CodeMeta is a community standard and initiative focused on creating a
    minimal metadata schema for scientific software and code, promoting their
    findability, preservation, and reuse through machine-readable metadata in
    JSON-LD format.
  url: 'https://codemeta.github.io/'
  catalog: RSQKit
- id: sqaaas
  name: SQAaas
  description: >-
    Software Quality Assessment as a Service - the Quality Assessment & Awarding
    building block analysing the level of completeness with the FAIR4RS
    reference criteria for any given release of your software
  url: 'https://sqaaas.eosc-synergy.eu/'
  catalog: TechRadar
- id: gitleaks
  name: gitleaks
  description: >-
    SAST tool for detecting and preventing hardcoded secrets like passwords, API
    keys, and tokens in code stored in Git repositories
  url: 'https://github.com/gitleaks/gitleaks'
  catalog: TechRadar
- id: black
  name: Black
  description: Automated Python code formatter
  url: 'https://github.com/psf/black'
  catalog: TechRadar
- id: pre-commit
  name: precommit
  description: A framework for managing and maintaining multi-language pre-commit hooks
  url: 'https://pre-commit.com/'
  catalog: TechRadar
- id: reuse
  name: REUSE
  description: >-
    Automate the declaring of copyright and licensing for software projects with
    SPDX Tags
  url: 'https://reuse.software/'
  catalog: TechRadar
- id: fair-aware
  name: FAIR Aware
  description: Guided approach to assess the FAIRness of data
  url: 'https://fairaware.dans.knaw.nl/'
  catalog: TechRadar
- id: creative-commons-license-chooser
  name: Creative Commons License Chooser
  description: >-
    Creative Commons license chooser to help you select an appropriate Creative
    Commons license
  url: 'https://chooser-beta.creativecommons.org/'
  catalog: TechRadar
- id: mkdocs
  name: MKDocs
  description: A tool for creating static documentation for software projects from Markdown
  url: 'https://www.mkdocs.org/'
  catalog: TechRadar
- id: pytest
  name: Pytest
  description: Test automation framework for Python
  url: 'https://docs.pytest.org/en/latest/'
  catalog: TechRadar
- id: testthat
  name: testthat
  description: Unit Testing for R
  url: 'https://testthat.r-lib.org/'
  catalog: RSQKit
- id: test-jl
  name: Test.jl
  description: Test module for Julia
  url: 'https://docs.julialang.org/en/v1/stdlib/Test/'
  catalog: RSQKit
- id: tox
  name: tox
  description: Python testing tool
  url: 'https://tox.wiki/en/4.23.2/'
  catalog: TechRadar
- id: junit
  name: JUnit
  description: Test automation framework for Java
  url: 'https://junit.org/junit5/'
  catalog: TechRadar
- id: cppunit
  name: CPPUnit
  description: CPP testing tool
  url: 'https://freedesktop.org/wiki/Software/cppunit/'
  catalog: TechRadar
- id: apptainer
  name: Apptainer
  description: >-
    Apptainer (formerly Singularity) simplifies the creation and execution of
    containers, ensuring software components are encapsulated for portability
    and reproducibility, especially in High Performance Computing (HPC)
    environments.
  url: 'https://apptainer.org/'
  catalog: TechRadar
- id: singularityce 
  name: SingularityCE
  description: >-
    Singularity is an open source container platform allows us to create and run
    containers that package up pieces of software in a way that is portable and
    reproducible. Singularity is designed for ease-of-use on shared multiuser
    systems and in High Performance Computing (HPC) environments. Singularity is
    compatible with all Docker images and it can be used with GPUs and MPI
    applications.
  url: 'https://sylabs.io/singularity/'
  catalog: TechRadar
- id: packer
  name: Packer
  description: >-
    Packer is an automated build system to manage the creation of identical
    images for containers and virtual machines (multiple platforms) from a
    single source configuration, encapsulating 'Images as Code' philosophy. 
    Packer is lightweight, runs on every major operating system, and is highly
    performant, creating machine images for multiple platforms in parallel.
  url: 'https://www.packer.io/'
  catalog: RSQKit
- id: ruff
  name: Ruff
  description: An extremely fast Python linter and code formatter written in Rust
  url: 'https://docs.astral.sh/ruff/'
  catalog: TechRadar
- id: pylint
  name: Pylint
  description: Static code analysis tool for Python
  url: 'https://pylint.readthedocs.io/en/stable/'
  catalog: TechRadar
- id: hadolint
  name: Hadolint
  description: Dockerfile linter
  url: 'https://github.com/hadolint/hadolint'
  catalog: TechRadar
- id: flake8
  name: Flake8
  description: Static code analysis tool for Python
  url: 'https://flake8.pycqa.org/en/latest/'
  catalog: TechRadar
- id: checkstyle
  name: Checkstyle
  description: Static code analysis tool for Java
  url: 'https://catalogforge.net/projects/checkstyle/'
  catalog: TechRadar
- id: gcov
  name: Gcov
  description: Code coverage analysis tool
  url: 'https://gcc.gnu.org/onlinedocs/gcc/Gcov.html'
  catalog: TechRadar
- id: valgrind
  name: Valgrind
  description: >-
    Detect memory management and threading bugs, run profiling to see how to
    speed up your programs
  url: 'https://valgrind.org/'
  catalog: TechRadar
- id: dvc
  name: DVC
  description: >-
    Data Version Control - to help you manage and version images, audio, video,
    and text files in storage and organise your ML modeling process into a
    reproducible workflow
  url: 'https://dvc.org/'
  catalog: TechRadar
- id: dependabot
  name: Dependabot
  description: Generate automated pull requests updating dependencies for projects
  url: 'https://github.com/dependabot/dependabot-core'
  catalog: TechRadar
- id: sonarqube
  name: SonarQube
  description: >-
    Continuous inspection of code quality to perform automatic reviews for
    static analysis of code
  url: 'https://www.sonarcatalog.com/products/sonarqube/'
  catalog: TechRadar
- id: selenium
  name: Selenium
  description: >-
    Automates Web browser interaction from Python - Selenium WebDriver is often
    used as a basis for testing Web applications
  url: 'https://pypi.org/project/selenium/'
  catalog: TechRadar
- id: jupyterbook
  name: Jupyter-Book
  description: >-
    For building publication-quality books and documents from computational
    material
  url: 'https://pypi.org/project/jupyter-book/'
  catalog: TechRadar
- id: git
  name: Git
  description: >-
    Distributed version control system designed to handle everything from small
    to very large projects with speed and efficiency
  url: 'https://git-scm.com/'
  catalog: TechRadar
- id: jenkins
  name: Jenkins
  description: 'Automation server to support building, testing and deploying software'
  url: 'https://www.jenkins.io/'
  catalog: TechRadar
- id: travis-ci
  name: Travis CI
  description: 'CI platform to support building, testing and deploying software'
  url: 'https://www.travis-ci.com/'
  catalog: TechRadar
- id: kubernetes
  name: Kubernetes
  description: >-
    Kubernetes is a container orchestration platform that manages the
    deployment, scaling, and operation of containerised applications.
  url: 'https://kubernetes.io/'
  catalog: TechRadar
- id: cmake
  name: CMake
  description: Software Build System.
  url: 'https://cmake.org/'
  catalog: TechRadar
- id: nixos
  name: NixOS
  description: >-
    NixOS is a free and open-source Linux distribution based on the Nix package
    manager.  It uses declarative configuration (using the Nix language) to
    manage packages and the entire system environment - allowing for
    reproducibility and portability.
  url: 'https://nixos.org/'
  catalog: TechRadar
- id: guix
  name: Guix
  description: Package manager.
  url: 'https://guix.gnu.org/'
  catalog: TechRadar
- id: rpm
  name: RPM
  description: >-
    GNU Guix is a package manager for GNU/Linux systems that gives users more
    control over their general-purpose and specialised computing environments,
    and makes these easier to reproduce over time and deploy to one or many
    devices.
  url: 'https://rpm.org/'
  catalog: TechRadar
- id: zammad
  name: Zammad
  description: 'Helpdesk software, ticketing system'
  url: 'https://zammad.com/en'
  catalog: RSQKit
- id: inveniordm
  name: InvenioRDM
  description: >-
    InvenioRDM is a turn-key research data management (RDM) repository based on
    Invenio Framework and Zenodo
  url: 'https://inveniosoftware.org/products/rdm/'
  catalog: RSQKit
- id: software-heritage
  name: Software Heritage
  description: >-
    Software Heritage archive is the largest public collection of source code in
    existence. It Collects, preserves, curates and makes available software in
    source code form as cultural heritage
  url: 'https://www.softwareheritage.org'
  catalog: TechRadar
- id: jasonldvalidator
  name: JSON-LD validator
  description: Service to validate JSON-LD files
  url: 'https://json-ld.org/playground'
  catalog: RSQKit
- id: somef
  name: SOMEF
  description: >-
    Software Metadata Extraction Framework (SOMEF) is a command line tool for
    automatically extracting relevant software information from README files
  url: 'https://github.com/KnowledgeCaptureAndDiscovery/somef'
  catalog: TechRadar
- id: somef-vider
  name: SOMEF Vider
  description: >-
    Somef Vider is a web application that retrieves the metadata of the given
    GitHub repository through the Software Metadata Extraction Framework (SOMEF)
    and shows it in a user-friendly way.
  url: 'https://somef.linkeddata.es/'
  catalog: TechRadar
- id: readthedocs
  name: Read the Docs
  description: >-
    Read the Docs serves as a documentation building and hosting platform aimed
    at helping developers create documentation from code
  url: 'https://about.readthedocs.com/'
  catalog: RSQKit
- id: sphinx
  name: Sphinx
  description: >-
    Documentation generator from reStructuredText files primarily for Python,
    but also supports other languages - C++, C, JavaScript.
  url: 'https://www.sphinx-doc.org'
  catalog: TechRadar
- id: gitlab
  name: GitLab
  description: >-
    DevOps platform that enables teams to collaborate, plan, develop, test, and
    deploy software using an integrated toolset for version control, CI/CD, and
    project management.
  url: 'https://about.gitlab.com/'
  catalog: TechRadar
- id: greenalgorithms
  name: Green Algorithms
  description: >-
    An online tool to estimate the carbon footprint of computational tasks using
    a web calculator
  url: 'https://www.green-algorithms.org/'
  catalog: RSQKit
- id: codecarbon
  name: CodeCarbon
  description: >-
    CodeCarbon is a software package that integrates into Python codebase and
    estimates the amount of carbon dioxide (CO2) produced by the cloud or
    personal computing resources used to execute the code
  url: 'https://codecarbon.io/'
  catalog: RSQKit
- id: greenspectorstudio
  name: Greenspector Studio
  description: >-
    Greenspector is a tool that measures energy usage and resource efficiency in
    web and mobile applications
  url: 'https://greenspector.com/en/home/'
  catalog: RSQKit
- id: carbontracker
  name: carbontracker
  description: >-
    carbontracker tracks and predicts the energy consumption and carbon
    footprint of training deep learning models
  url: 'https://github.com/lfwa/carbontracker'
  catalog: RSQKit
- id: ecograder
  name: Ecograder
  description: Evaluates website sustainability based on design and operational efficiency
  url: 'https://ecograder.com/'
  catalog: RSQKit
- id: pep8
  name: PEP8
  description: Style guide for Python code
  url: 'https://peps.python.org/pep-0008/'
  catalog: RSQKit
- id: r-language-style-guide
  name: R Style Guide
  description: Google’s R code style guide
  url: 'https://google.github.io/styleguide/Rguide.html'
  catalog: RSQKit
- id: code-linters
  name: Code Linters
  description: Static code analysis tools
  url: 'https://en.wikipedia.org/wiki/Lint_%28software%29'
  catalog: RSQKit
- id: google-programming-style-guide
  name: Google’s programming style guide
  description: >-
    Style guidelines (a set of conventions about how to write code for a
    project) used for Google code.
  url: 'https://google.github.io/styleguide/'
  catalog: RSQKit
- id: pycharm
  name: PyCharm
  description: >-
    PyCharm is a free Python Integrated Development Environment (IDE) for
    application, data science and web development.
  url: 'https://www.jetbrains.com/pycharm/'
  catalog: RSQKit
- id: eclipse
  name: Eclipse
  description: >-
    Eclipse is a free and open-source Integrated Development Environment (IDE)
    used for Java development, with support for developing applications in other
    programming languages too.
  url: 'https://eclipseide.org/'
  catalog: RSQKit
- id: jsdoc
  name: JSDoc
  description: >-
    JSDoc is a tool and a markup language that serves as an API documentation
    generator for JavaScript, similar to Javadoc.
  url: 'https://jsdoc.app/'
  catalog: RSQKit
- id: python-docstring-generator
  name: Python Docstring Generator
  description: >-
    Python Docstring Generator (autoDocstring) is a Visual Studio Code extension
    to quickly generate docstrings for python functions.
  url: 'https://marketplace.visualstudio.com/items?itemName=njpwerner.autodocstring'
  catalog: RSQKit
- id: doxygen
  name: Doxygen
  description: >-
    Doxygen is a documentation generator tool in software development for C++
    (and also C, Python, PHP, Java, C#, Objective-C, Fortran, VHDL, Splice, IDL,
    and Lex)
  url: 'https://www.doxygen.nl/'
  catalog: TechRadar
- id: swagger
  name: Swagger
  description: >-
    A suite of tools for API developers that generate APIs from code (and the
    basis for the OpenAPI Specification)
  url: 'https://swagger.io/'
  catalog: RSQKit
- id: roxygen
  name: Roxygen
  description: >-
    Roxygen2 is an R package that makes it easier to document R code, especially
    functions, datasets, and packages.
  url: 'https://roxygen2.r-lib.org/'
  catalog: RSQKit
- id: mercurial
  name: Mercurial
  description: >-
    Mercurial is a free, distributed source control management tool. Ιt
    efficiently handles projects of any size and offers an easy and intuitive
    interface
  url: 'https://www.mercurial-scm.org/'
  catalog: RSQKit
- id: subversion
  name: Subversion
  description: >-
    Subversion is a centralized version control system used to manage and track
    changes to files and directories over time. It is particularly popular for
    managing source code in software development but can be used for any type of
    file.
  url: 'https://github.com/apache/subversion'
  catalog: RSQKit
- id: perforce
  name: Perforce
  description: >-
    Highly scalable development and DevOps solutions designed to deliver dynamic
    development, intelligent testing and risk management environment
  url: 'https://www.perforce.com/'
  catalog: RSQKit
- id: git-lfs
  name: Git Large File Storage
  description: >-
    Git Large File Storage is an open source Git extension for versioning large
    files, such as audio samples, videos, datasets, and graphics.
  url: 'https://git-lfs.github.com/'
  catalog: RSQKit
- id: rstudio
  name: RStudio
  description: >-
    RStudio is an Integrated Development Environment (IDE) for R, a programming
    language for statistical computing and graphics.
  url: 'https://posit.co/download/rstudio-desktop/'
  catalog: RSQKit
- id: pip
  name: pip
  description: >-
    pip is the package installer for Python. It allows you to install and manage
    additional libraries and dependencies that are not part of the Python
    standard library.
  url: 'https://pypi.org/project/pip/'
  catalog: RSQKit
- id: uv
  name: uv
  description: 'uv is an extremely fast Python package and project manager, written in Rust.'
  url: 'https://github.com/astral-sh/uv'
  catalog: RSQKit
- id: venv
  name: venv
  description: >-
    venv is a Python module for creating lightweight “virtual environments”,
    each with their own independent set of Python packages installed in their
    site directories
  url: 'https://docs.python.org/3/library/venv.html'
  catalog: RSQKit
- id: renv
  name: renv
  description: >-
    renv is an R package that helps you create reproducible environments for
    your R projects - use renv to make your R projects more isolated, portable
    and reproducible
  url: 'https://rstudio.github.io/renv/index.html'
  catalog: RSQKit
- id: conda
  name: Conda
  description: >-
    Open-source, cross-platform, language-agnostic package manager and
    environment management system - originally developed to solve package
    management challenges faced by Python data scientists
  url: 'https://anaconda.org/anaconda/conda'
  catalog: RSQKit
- id: semantic-versioning
  name: Semantic Versioning
  description: >-
    Semantic versioning (SemVer) is a widely-adopted version scheme that encodes
    a version of a project by a three-part version number (MAJOR.MINOR.PATCH),
    an optional pre-release tag, and an optional build meta tag.
  url: 'https://semver.org/'
  catalog: RSQKit
- id: calendar-versioning
  name: Calendar Versioning
  description: >-
    Calendar Versioning (CalVer) is a versioning convention based on your
    project's release calendar, instead of arbitrary numbers.
  url: 'https://calver.org/'
  catalog: RSQKit
- id: pkg-jl
  name: Pkg.jl
  description: Pkg.jl is a package manager for the Julia programming language.
  url: 'https://pkgdocs.julialang.org/v1/'
  catalog: RSQKit
- id: conan
  name: Conan
  description: >-
    Conan is an open catalog, decentralised and multi-platform package manager
    for C and C++ that allows for creating and sharing native binaries.
  url: 'https://conan.io/'
  catalog: RSQKit
- id: maven
  name: Maven
  description: >-
    Maven is a software project management and build automation tool used
    primarily for Java, but can also be used to build and manage projects
    written in C#, Ruby, Scala, and other programming languages.
  url: 'https://maven.apache.org/'
  catalog: RSQKit
- id: bundler
  name: Bundler
  description: Bundler is a Ruby gems and environment management tool for Ruby projects.
  url: 'https://bundler.io/'
  catalog: RSQKit
- id: fair-python-cookiecutter
  name: FAIR Python Cookiecutter
  description: >-
    FAIR Python Cookiecutter is a cookiecutter template command-line tool to
    help you kickstart a modern best-practice Python project with FAIR metadata
  url: >-
    https://github.com/Materials-Data-Science-and-Informatics/fair-python-cookiecutter
  catalog: TechRadar
- id: documenter-jl
  name: Documenter.jl
  description: >-
    Documenter.jl is a documentation generator for Julia, a package for building
    documentation from docstrings and markdown files.
  url: 'https://documenter.juliadocs.org/stable/'
  catalog: RSQKit
- id: prettier-code-formatter
  name: Prettier
  description: >-
    Prettier is a code formatter to enforce a consistent style with its own
    rules for different languages, including JavaScript, TypeScript, Flow, JSX,
    JSON, CSS, SCSS, Less, HTML, Vue, Angular, GraphQL, Markdown, and YAML.
  url: 'https://prettier.io/'
  catalog: RSQKit
- id: fortran
  name: Fortran
  description: >-
    Modern Fortran is high-performance parallel programming language that is
    especially suited to numeric computation and scientific computing.
  url: 'https://fortran-lang.org/'
  catalog: RSQKit
- id: vagrant
  name: Vagrant
  description: >-
    Vagrant is a tool that simplifies and provides a single workflow for the
    creation and management of virtual machines, and provides full VM isolation.
  url: 'https://www.vagrantup.com/'
  catalog: RSQKit
- id: ansible
  name: Ansible
  description: >-
    Ansible is a suite of open source command line tools (written in Python)
    that enables Infrastructure as Code (IaC) - including configuring systems,
    deploying software, and orchestrating workflows, known for its simplicity
    and ease of use.
  url: 'https://docs.ansible.com/ansible/latest/getting_started/index.html'
  catalog: RSQKit
- id: terraform
  name: Terraform
  description: >-
    Terraform is a powerful and one of the most popular Infrastructure as Code
    (IaC) tools that enables infrastructure management across multiple cloud
    providers using a simple, declarative language,
  url: 'https://www.terraform.io/'
  catalog: RSQKit
- id: wdl
  name: Workflow Description Language
  description: >-
    Workflow Description Language (WDL) is an open standard for describing data
    processing workflows with a human-readable and writeable syntax.
  url: 'https://openwdl.org/'
  catalog: RSQKit
- id: galaxy
  name: Galaxy
  description: >-
    Galaxy is a free, open-source workflow management system for analysing data,
    authoring workflows, training and education, publishing tools, and managing
    infrastructure.
  url: 'https://galaxyproject.org/'
  catalog: RSQKit
- id: keras
  name: Keras
  description: >-
    Keras is a multi-backend deep learning framework, with support for JAX,
    TensorFlow, PyTorch, and OpenVINO (for inference-only) to build and train
    models for computer vision, natural language processing, audio processing,
    timeseries forecasting, recommender systems, etc.
  url: 'https://github.com/keras-team/keras'
  catalog: RSQKit
- id: tortellini-action
  name: tortellini-action
  description: >-
    Tortellini Action is GitHub action to run licence analysis on a GitHub
    repository.
  url: 'https://github.com/marketplace/actions/tortellini-action'
  catalog: TechRadar
- id: somesy
  name: Somesy
  description: >-
    Somesy (software metadata sync) is a CLI tool to avoid messy software
    project metadata by keeping it in sync.
  url: 'https://github.com/Materials-Data-Science-and-Informatics/somesy'
  catalog: TechRadar
- id: claude
  name: Claude
  description: >-
    Claude is a a generative artificial intelligence chatbot developed by
    Anthropic and able to produce code or answer questions on code.
  url: 'https://claude.ai/new'
  catalog: TechRadar
- id: github-copilot
  name: Github Copilot
  description: >-
    Github Copilot is a code completion and automatic programming tool developed
    by GitHub and OpenAI that assists users of Visual Studio Code, Visual
    Studio, Neovim, and JetBrains integrated development environments (IDEs) by
    autocompleting code.
  url: 'https://github.com/features/copilot'
  catalog: RSQKit
- id: jupyter-book
  name: Jupyter Book
  description: >-
    Jupyter Book is a tool to build publication quality books and documents from
    computational material.
  url: 'https://pypi.org/project/jupyter-book/'
  catalog: RSQKit
- id: scanoss
  name: SCANOSS
  description: >-
    SCANOSS is a tool that helps identify and manage open-source components in
    software by scanning for licenses, vulnerabilities, and compliance risks.
  url: 'https://www.scanoss.com/'
  catalog: TechRadar
- id: nextflow
  name: Nextflow
  description: >-
    Nextflow is a workflow management system that enables scalable,
    reproducible, and portable scientific workflows for research and production
    use cases.
  url: 'https://www.nextflow.io'
  catalog: RSQKit
- id: snakemake
  name: Snakemake
  description: >-
    Snakemake is a workflow management system and language to create
    reproducible and scalable data analyses. Workflows are described via a human
    readable, Python based language.
  url: 'https://snakemake.readthedocs.io'
  catalog: RSQKit
- id: parsl
  name: Parsl
  description: >-
    Parsl is a flexible and scalable parallel programming library for Python
    that enables parallel and asynchronous execution of data-oriented workflows.
  url: 'https://parsl.readthedocs.io/en/stable/userguide/workflows/workflow.html'
  catalog: RSQKit
- id: apache-airflow
  name: Apache Airflow
  description: >-
    Apache Airflow is a platform to programmatically author, schedule and
    monitor workflows.
  url: 'https://airflow.apache.org/'
  catalog: RSQKit
- id: lifemonitor
  name: LifeMonitor
  description: >-
    LifeMonitor is a service to support the sustainability and reusability of
    published computational workflows.
  url: 'https://lifemonitor.eu'
  catalog: RSQKit
- id: workflowhub
  name: WorkflowHub
  description: >-
    WorkflowHub is a registry for describing, sharing and publishing scientific
    computational workflows.
  url: 'https://workflowhub.eu/'
  catalog: RSQKit
- id: reprozip
  name: ReproZip
  description: >-
    ReproZip automatically packs research along with all necessary data files,
    libraries, environment variables and options into a self-contained bundle
    which can be used to set up the same original environment so anybody can
    reproduce the research on a different machine, without tracking down and
    installing the dependencies, or even having to run the same operating
    system.
  url: 'https://www.reprozip.org/'
  catalog: RSQKit
- id: bitbucket
  name: BitBucket
  description: >-
    Bitbucket is used for hosting and managing source code repositories, 
    primarily using Git, and is designed to help software development teams 
    collaborate on code, automate builds and deployments with Bitbucket Pipelines, 
    and integrate with other tools like Jira.
  url: 'https://bitbucket.org/'
  catalog: RSQKit
- id: dockstore
  name: Dockstore
  description: >-
    Dockstore is a free and open source platform for sharing reusable and scalable analytical bioinformatics tools and workflows.
  url: 'https://dockstore.org/'
- id: eslint
  name: ESLint
  description: >-
    ESLint is a pluggable linting tool for JavaScript and TypeScript that
    enforces code quality and style rules through static analysis.
  url: 'https://eslint.org/'
  catalog: RSQKit
- id: angular
  name: Angular
  description: >-
    Angular is a TypeScript-based web application framework that provides a
    structured, component-driven architecture for building scalable client-side
    applications.
  url: 'https://angular.io/'
  catalog: RSQKit
- id: nestjs
  name: NestJS
  description: >-
    NestJS is a progressive Node.js framework that uses TypeScript and a
    modular, dependency-injected architecture to build efficient and maintainable
    server-side applications.
  url: 'https://nestjs.com/'
  catalog: RSQKit
- id: jest
  name: Jest
  description: >-
    Jest is a JavaScript testing framework focused on simplicity, offering
    zero-configuration unit testing with built-in mocking, assertions, and
    snapshot capabilities.
  url: 'https://jestjs.io/'
  catalog: RSQKit
- id: nodejs
  name: Node.js
  description: >-
    Node.js is a JavaScript runtime built on Chrome's V8 engine for running
    JavaScript on the server. It provides an event-driven, non-blocking I/O
    model suited to building scalable network applications.
  url: 'https://nodejs.org/'
  catalog: RSQKit
- id: mongodb
  name: MongoDB
  description: >-
    MongoDB is a document-oriented NoSQL database used for high performance,
    high availability, and easy scalability.
  url: 'https://www.mongodb.com/'
  catalog: RSQKit
- id: mongoose
  name: Mongoose
  description: >-
    Mongoose is an object data modelling (ODM) library for MongoDB and Node.js,
    providing a schema-based solution to model application data.
  url: 'https://mongoosejs.com/'
  catalog: RSQKit
- id: orcid
  name: ORCID
  description: >-
    ORCID provides persistent digital identifiers (ORCID iDs) that distinguish
    researchers and a mechanism for linking contributions and affiliations to
    those identifiers.
  url: 'https://orcid.org/'
  catalog: RSQKit
- id: bip-scholar
  name: BIP! Scholar
  description: >-
    BIP! Scholar enriches user profiles with bibliometric and scholarly
    indicators drawn from OpenAIRE and related sources.
  url: 'https://bip.imsi.athenarc.gr/scholar'
  catalog: RSQKit
- id: nginx
  name: Nginx
  description: >-
    Nginx is a high-performance HTTP server and reverse proxy, as well as an
    IMAP/POP3 proxy server, commonly used to serve static content and as a
    load balancer.
  url: 'https://nginx.org/'
  catalog: RSQKit
- id: apache-http-server
  name: Apache HTTP Server
  description: >-
    The Apache HTTP Server is a widely-used open source web server providing
    robust and extensible features to serve web content.
  url: 'https://httpd.apache.org/'
  catalog: RSQKit
- id: domereg
  name: DOME Registry
  description: >-
    A centralized, community-driven web platform that operationalizes the DOME recommendations (Data, Optimization, Model, Evaluation) to enable the standardized reporting, discovery, and transparent validation of machine learning methods in the life sciences.
  url: 'https://registry.dome-ml.org'
  catalog: RSQKit
- id: osaieco
  name: OSAI AI Ecosystem
  description: >-
    A living, community-curated inventory of over 300 AI tools and resources mapped to practical pathways for implementing Open and Sustainable AI (OSAI) practices in research.
  url: 'https://osai.dome-ml.org/ai-ecosystem'
  catalog: RSQKit
- id: software-management-wizard
  name: Software Management Wizard
  description: >-
    Software Management Wizard builds on the Data Stewardship Wizard (DSW) project to provide guided, structured support for creating and maintaining Software Management Plans (SMPs) throughout the software lifecycle. It enables teams to collaboratively produce SMPs that are both human-readable and machine-actionable, while aligning with community standards and supporting different types of research software.
  url: 'https://smw.dsw.elixir-europe.org/'
  catalog: RSQKit
- id: auto-codemeta
  name: Auto CodeMeta generator
  description: The Auto CodeMeta generator is a web application designed to simplify the creation of codemeta.json files, which are used to provide structured metadata for research software and code.
  url: https://autocodemeta.linkeddata.es/
  catalog: TechRadar
- name: flowR
  id: flowr
  description: >-
    flowR is a static dataflow analyser, linter, and program slicer for the R programming language,
    helping to understand, debug, and improve R scripts.
  url: https://github.com/flowr-analysis/flowr
  catalog: RSQKit
- id: pixi
  name: Pixi
  description: >-
    Pixi is a fast, modern, and reproducible package and environment management tool for developers of all backgrounds, based on the conda ecosystem.
  url: 'https://pixi.prefix.dev/latest/'
  catalog: TechRadar
- id: nanobind
  name: nanobind
  description: >-
    nanobind is a small binding library that exposes C++ types in Python and vice versa.
  url: 'https://nanobind.readthedocs.io/en/latest/'
  catalog: RSQKit
- id: ctest
  name: ctest
  description: >-
    The ctest executable is the CMake test driver program. 
    CMake-generated build trees created for projects that use the enable_testing() and add_test() commands have testing support. 
    This program will run the tests and report results.
  url: 'https://cmake.org/cmake/help/latest/manual/ctest.1.html'
  catalog: RSQKit
- id: cargo
  name: cargo
  description: >-
    Cargo is the Rust package manager. 
    Cargo downloads your Rust package’s dependencies, compiles your packages, makes distributable 
    packages, and uploads them to crates.io, the Rust community’s package registry. 
  url: 'https://doc.rust-lang.org/cargo/'
  catalog: RSQKit
- id: maqao
  name: maqao
  description: >-
    MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework 
    operating at binary level with a focus on core performance. Its main goal of is to guide application developers 
    along the optimization process through synthetic reports and hints. 
  url: 'https://maqao.org/'
  catalog: TechRadar
- id: malt
  name: malt
  description: >-
    MALT is a memory tool to find where you allocate your memory. It also provides you some statistics about memory usage 
    and help to find memory leaks.
  url: 'https://memtt.github.io/malt/doc/latest/'
  catalog: TechRadar
- id: renovatebot
  name: renovate bot
  description: >-
    Automates dependency updates, multi-platform and multi-language.
  url: 'https://docs.renovatebot.com/'
  catalog: TechRadar
- id: cran
  name: CRAN
  description: >-
    CRAN (The Comprehensive R Archive Network) is a network of worldwide servers storing identical, up-to-date versions of code, 
    documentation, and packages for the R programming language. It is the primary repository for R, providing essential tools 
    for statistical computing, data analysis, and graphics, including base R binaries for Windows, macOS, and Linux.
  url: https://cran.r-project.org/
  catalog: RSQKit
- id: biotools
  name: bio.tools
  description: >-
    Essential scientific and technical information about software tools, databases and services for bioinformatics and the life sciences.
  url: https://bio.tools/
  catalog: RSQKit
- id: fair-rs-evaluator
  name: FAIRsoft Evaluator
  description: >-
    A tool for assessing the FAIRness of software from its metadata using the FAIRsoft indicators.
  url: https://openebench.bsc.es/observatory/Evaluation
  catalog: RSQKit
- id: fair-rs-checklist
  name: FAIR software checklist
  description: >-
    FAIR software checklist - an interactive self-assessment tool with questions about FAIRness of research software.
  url: https://fairsoftwarechecklist.net
  catalog: RSQKit
- id: codecheck
  name: CODECHECK
  description: >-
    CODECHECK tackles one of the main challenges of computational research by supporting codecheckers with a workflow, guidelines and tools to evaluate computer programs underlying scientific papers.
  url: https://codecheck.org.uk/
  catalog: RSQKit
- id: rsfc
  name: RSFC
  description: >-
    A command line tool that performs a quality assessment based on a series of Research Software Quality Indicators (RSQIs)
  url: https://rsfc.linkeddata.es