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Hey, I'm Florian 👋

Senior Bioinformatics Engineer @ Seqera.

I help life sciences and biotech teams get their computational workflows running in the cloud. My work sits at the intersection of pipeline development, cloud infrastructure, and making bioinformatics accessible to scientists.

Previously: cardiovascular genetics research (PhD, University of Muenster + CHU Ste Justine research center) → spatial omics & multiplexed imaging (postdoc, Institute for Computational Biomedicine, Heidelberg).


🔬 What I work on

  • Nextflow pipelines — building, optimizing, and deploying reproducible bioinformatics workflows at scale
  • Cloud infrastructure — AWS Batch, GCP, Nebius, Kubernetes (including GPU workloads with H100s for protein design)
  • nf-core — contributor & maintainer, creator of nf-core/molkart for multiplexed tissue imaging analysis
  • Computational protein designnf-proteindesign pipeline (Boltz-2, ProteinMPNN, OpenFold3)
  • AI + Bioinformatics — exploring LLM-powered workflow orchestration, MCP integrations, and agentic tooling for scientific computing

🛠️ Tech Stack

Workflow & Orchestration

Nextflow Seqera Platform Snakemake

Languages

Python Groovy R Bash

Cloud & Infrastructure

AWS GCP Kubernetes Docker Terraform

AI & ML

Claude PyTorch Hugging Face

Bioinformatics

nf-core Bioconductor Conda Biocontainers


🌍 Languages I speak

🇩🇪 German · 🇬🇧 English · 🇫🇷 French · 🇪🇸 Spanish (learning)


📫 Get in touch

LinkedIn Google Scholar