Merge pull request #279366 from Homebrew/bump-breseq-0.40.1

breseq 0.40.1

Author: BrewTestBot

Formula/b/breseq.rb

@@ -1,18 +1,18 @@
 class Breseq < Formula
   desc "Computational pipeline for finding mutations in short-read DNA resequencing data"
   homepage "https://barricklab.org/breseq"
-  url "https://github.com/barricklab/breseq/archive/refs/tags/v0.40.0.tar.gz"
-  sha256 "1728515bea394dd0876ca5dedc78c724b836c370bb201bda1d585cb6fa058a52"
+  url "https://github.com/barricklab/breseq/archive/refs/tags/v0.40.1.tar.gz"
+  sha256 "69892a3b49e60ea8c50f70115ee983531744dbfa4434c55ee4df490051846b18"
   license all_of: ["GPL-2.0-or-later", "MIT", "BSD-3-Clause"]
   head "https://github.com/barricklab/breseq.git", branch: "master"
 
   bottle do
-    sha256 cellar: :any_skip_relocation, arm64_tahoe:   "c3d40182dbf71cddc316bd1349d70fa7c2aa5a262324bba93a0090e6225bfc70"
-    sha256 cellar: :any_skip_relocation, arm64_sequoia: "1654a72c4ba499ff47f755911bc21cfa86268b5d825c9099dcf567b1ccad3afd"
-    sha256 cellar: :any_skip_relocation, arm64_sonoma:  "247f05cb7334de6abb903f2e9bef85d086c9c11f9e4138b8f4d9fbbdbc3ccf54"
-    sha256 cellar: :any_skip_relocation, sonoma:        "d8b18f44c48e8610c9ba5ab84e6a8954649b2fc8883409fe32088a8f5980f7b9"
-    sha256 cellar: :any_skip_relocation, arm64_linux:   "3c49d20b3be67929b921d1174fb5d2702f786ca6d6563ec63af7110b9a2f9a59"
-    sha256 cellar: :any_skip_relocation, x86_64_linux:  "61129433de0f2142a2b0c6c8ba4bb7282f2c5da0220d097976c15016f8eb1cce"
+    sha256 cellar: :any_skip_relocation, arm64_tahoe:   "8dad7c2a01f9d0c772f9fc04e2ea480fea88ec69d219c4568d06a012a49118ce"
+    sha256 cellar: :any_skip_relocation, arm64_sequoia: "831dd94986ca8cfab50490597a38cf2d09f7802003f9fcc6e622bbc076fbcb1d"
+    sha256 cellar: :any_skip_relocation, arm64_sonoma:  "fa6898ac03f6c83eef4f532f79bcd8b3e8f209e28d43d7814303052f3669a25e"
+    sha256 cellar: :any_skip_relocation, sonoma:        "49966901cd1ec0b5107a48744997bbbe782e45867ace6030ef0c3f678eb12227"
+    sha256 cellar: :any_skip_relocation, arm64_linux:   "380d45d154aed1505c0bb4a5dcf6bd771aaa00cf2923e5cedf9fa2dc7db53803"
+    sha256 cellar: :any_skip_relocation, x86_64_linux:  "e8f11eabe07074878684abe6beaecf6468c1f7a5cdadbc0539ff1a9fe6cc6e90"
   end
 
   depends_on "autoconf" => :build
@@ -33,9 +33,6 @@ class Breseq < Formula
   end
 
   def install
-    # Remove hardcoded static zlib option
-    inreplace "configure.ac", "with_static_libz=\"$WITH_STATIC_LIBZ\"", ""
-
     system "./bootstrap.sh"
     system "./configure", "--disable-silent-rules", *std_configure_args
     system "make", "install"