portal_client/CHANGES at master · IGS/portal_client · GitHub

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portal_client 1.5.3

 * Increased csv field_size_limit to handle manifests with wide
   columns. This is relevant when a file is connected to many
   different samples.

 - Roland <rlaboulaye@github.com>  Wed, 4 Mar 2026 01:00:00 -0400

portal_client 1.5.2

 * Fixed endpoint priority bug that caused the first manifest file
   to skip GS URLs. Centralized priority resolution and extracted
   AWS EC2 detection into a standalone utility function.
 * Replaced print-based progress reporting with tqdm progress bars.
   An overall bar tracks file count and a per-file bar shows
   byte-level download progress across all protocols.
 * Converted GCP downloads to chunked reads via blob.open() to
   enable byte-level progress reporting.
 * Added --silent flag to suppress all output except errors.
 * Added startup info (endpoint priority, file count) and a
   success summary message on completion.

 - Roland <rlaboulaye@github.com>  Wed, 11 Feb 2026 16:00:00 -0400

portal_client 1.5.1
 * Using the client bucket() method instead of get_bucket()

 - Victor <victor73@github.com>  Thu, 20 Nov 2025 12:00:00 -0400

portal_client 1.5.0

 * Dropped support for older pythons. Requires 3.11 or better.
 * Abandoned setup.py for the more modern pyproject.toml file.
 * Reworked the GCP method of downloading from buckets to just
   rely on ADC. No more secrets/credentials files and simpler
   CLI.
 * Updated Dockerfile
 * Changed the name of the CLI tool to portal-client.

 - Victor <victor73@github.com>  Tue, 28 Oct 2025 12:00:00 -0400

portal_client 1.4.4

 * Fixed authentication handling when processing manifests with
   multiple FASP resources to download. Was interactively querying
   the password for each download instead of just once for all.
   Reported by @pbieberstein.

 - Victor <victor73@github.com>  Thu, 21 Mar 2019 14:00:00 -0400

portal_client 1.4.3

 * Logging in convert_to_manifest.py.
 * Minor refactoring.
 * Improved documentation in classes per pylint.

 - Victor <victor73@github.com>  Tue, 05 Mar 2019 18:00:00 -0400

portal_client 1.4.2

 * Corrections to setup.py.
 * Addition of --version option.

 - Victor <victor73@github.com>  Sun, 03 Mar 2019 18:00:00 -0400

portal_client 1.4.1

 * Additional clarification about the virtualenv creation.
 * Separate installation document and new readme.
 * Checking for ascp being in the path when FASP endpoint is used.

 - Victor <victor73@github.com>  Fri, 01 Mar 2019 12:28:00 -0400

portal_client 1.4.0

 * Fixes FTP downloads for NCBI SRA FTP urls.
 * Adds new feature, --disable-validation, to turn off/disable MD5 checksum
   validation to boost performance for large files/transfers (or when MD5
   information is incorrect or unavailable).

 - Victor <victor73@github.com>  Fri, 01 Mar 2019 12:26:00 -0400

portal_client 1.3.0

 * Fixes problem with destination path using /, instead of os.path.join().

 - Victor <victor73@github.com>  Thu, 28 Feb 2019 15:00:00 -0400

portal_client 1.2.0

 * Major refactoring in several classes.
 * Replacement to the ihmpdcc/hmp_client project.

 - Victor <victor73@github.com>  Sun, 10 Feb 2019 10:06:00 -0400

portal_client 1.2

 * Updated documentation.
 * New FASP (Aspera) functionality.

 - jmatsumura <jmatsumura@github.com>  Wed, 14 Jun 2017 14:33:00 -0400

portal_client 1.1

 * Adding in a basic, but very convenient feature for creating a directory if
   it does not already exist.

 - jmatsumura <jmatsumura@github.com>  Tue, 13 Jun 2017 16:57:00 -0400

portal_client 1.0

 * Initial release.

 - jmatsumura <jmatsumura@github.com>  Wed, 07 Jun 2017 16:17:00 -0400