refactor!: top-level script "qtl" for running all timeline code
#1171
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ci | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| dataset: ci_test | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # build | |
| ############################################################################# | |
| build_timeline: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: build | |
| run: ./install.sh | |
| - name: tar # to preserve any permissions | |
| run: | | |
| tar cavf build_timeline.tar.zst target | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: build_timeline | |
| retention-days: 1 | |
| path: build_timeline.tar.zst | |
| # download test data | |
| ############################################################################# | |
| download_test_data: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - { type: detectors, schema: mon } | |
| - { type: physics, schema: dst } | |
| env: | |
| xrootd_file: xroot://sci-xrootd.jlab.org//osgpool/hallb/clas12/validation/recon/${{ matrix.schema }}/validation_files.tar.zst | |
| steps: | |
| - uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| lookup-only: true | |
| - name: download | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| run: xrdcp ${{ env.xrootd_file }} ./ | |
| - run: ls -lh . | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| # monitoring | |
| ############################################################################# | |
| run_monitoring: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: run monitoring | |
| run: bin/qtl histogram -d ${{env.dataset}} --findhipo --series --focus-${{matrix.type}} validation_files | |
| - run: tree slurm | |
| - run: tree outfiles | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: slurm_${{ matrix.type }} | |
| retention-days: 1 | |
| path: slurm | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: outfiles_monitoring_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| test_swifjob: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: test monitoring swifjob | |
| run: | | |
| single_rundir=$(find validation_files -mindepth 1 -maxdepth 1 -type d | head -n1) | |
| echo "single_rundir = $single_rundir" | |
| util/test-swifjob.sh $single_rundir runner --focus-${{ matrix.type }} | |
| - run: tree runner | |
| # timeline production | |
| ############################################################################# | |
| run_timelines: | |
| needs: | |
| - run_monitoring | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { type: detectors, run_script: 'bin/qtl analysis', args: '-n 4 --skip-mya' } | |
| - { type: physics, run_script: 'bin/run-physics-timelines.sh', args: '' } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: download outfiles | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: outfiles_* | |
| merge-multiple: true | |
| path: outfiles | |
| - name: download timeline build | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: run timelines | |
| run: ${{matrix.run_script}} -d ${{env.dataset}} ${{matrix.args}} | |
| - run: tree outfiles | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: outfiles_timelines_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| # timeline deployment | |
| ############################################################################# | |
| deploy_timelines: | |
| name: Deployment | |
| needs: | |
| - run_timelines | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: download outfiles | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: outfiles_* | |
| merge-multiple: true | |
| path: outfiles | |
| - name: download timeline build | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - name: tree outfiles | |
| run: | | |
| rm -r outfiles/${{ env.dataset }}/log | |
| echo "# Output File Tree" >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| tree outfiles | xargs -0 -I{} echo {} >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| - name: deploy | |
| run: bin/qtl deploy -d ${{env.dataset}} -c -t web | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: web | |
| retention-days: 14 | |
| path: web |