feat(qa): QA of RG-A Spring 2018 6.4 GeV data #1812
Workflow file for this run
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| name: ci | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| dataset: ci_test | |
| RCDB_CONNECTION: mysql://rcdb@clasdb.jlab.org/rcdb | |
| CCDB_CONNECTION: mysql://clas12reader@clasdb.jlab.org/clas12 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # build | |
| ############################################################################# | |
| build_timeline: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: build | |
| run: mvn install | |
| - run: bin/qtl --version | |
| - name: tar # to preserve any permissions | |
| run: | | |
| tar cavf build_timeline.tar.zst target | |
| - uses: actions/upload-artifact@v6 | |
| with: | |
| name: build_timeline | |
| retention-days: 1 | |
| path: build_timeline.tar.zst | |
| # download test data | |
| ############################################################################# | |
| download_test_data: | |
| runs-on: ubuntu-latest | |
| # NOTE: using Ubuntu runner, rather than a `container-forge` image, since it's much faster for cache hits | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| type: [ detectors, physics ] | |
| include: | |
| - { type: detectors, schema: mon } | |
| - { type: physics, schema: dst } | |
| steps: | |
| - uses: actions/cache@v5 | |
| id: cache | |
| with: | |
| key: validation_files_lfs_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| lookup-only: true | |
| - name: download | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| run: | | |
| GIT_LFS_SKIP_SMUDGE=1 git clone https://code.jlab.org/hallb/clas12/validation-data.git | |
| cd validation-data | |
| git lfs install --skip-smudge | |
| git config lfs.fetchinclude "recon/${{ matrix.schema }}/validation_files.tar.zst" | |
| git lfs pull | |
| mv -v recon/${{ matrix.schema }}/validation_files.tar.zst $GITHUB_WORKSPACE/ | |
| # histogramming | |
| ############################################################################# | |
| run_histogram: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: actions/cache/restore@v5 | |
| with: | |
| key: validation_files_lfs_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v7 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: qtl histogram | |
| run: | | |
| bin/qtl histogram \ | |
| -d ${{env.dataset}} \ | |
| --findhipo \ | |
| --series \ | |
| --focus-${{matrix.type}} \ | |
| validation_files | |
| - run: tree slurm | |
| - run: tree outfiles | |
| - uses: actions/upload-artifact@v6 | |
| with: | |
| name: slurm_${{ matrix.type }} | |
| retention-days: 1 | |
| path: slurm | |
| - uses: actions/upload-artifact@v6 | |
| with: | |
| name: outfiles_histogram_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| test_swifjob: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: actions/cache/restore@v5 | |
| with: | |
| key: validation_files_lfs_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v7 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: test swifjob | |
| run: | | |
| single_rundir=$(find validation_files -mindepth 1 -maxdepth 1 -type d | head -n1) | |
| echo "single_rundir = $single_rundir" | |
| util/test-swifjob.sh $single_rundir runner --focus-${{ matrix.type }} | |
| - run: tree runner | |
| # timeline production | |
| ############################################################################# | |
| run_analysis: | |
| needs: | |
| - run_histogram | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| include: | |
| - { type: detectors, qtl_cmd: 'bin/qtl analysis', args: '-j 4 --skip-mya' } | |
| - { type: physics, qtl_cmd: 'bin/qtl physics', args: '' } | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: download outfiles | |
| uses: actions/download-artifact@v7 | |
| with: | |
| pattern: outfiles_* | |
| merge-multiple: true | |
| path: outfiles | |
| - name: download timeline build | |
| uses: actions/download-artifact@v7 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: qtl analysis | |
| run: | | |
| ${{matrix.qtl_cmd}} \ | |
| -d ${{env.dataset}} \ | |
| -p web \ | |
| --custom-pub \ | |
| ${{matrix.args}} | |
| - run: tree outfiles | |
| - name: summarize | |
| run: | | |
| echo "# Output File Tree" >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| tree web | xargs -0 -I{} echo {} >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| - uses: actions/upload-artifact@v6 | |
| with: | |
| name: outfiles_timelines_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| - uses: actions/upload-artifact@v6 | |
| with: | |
| name: web_timelines_${{ matrix.type }} | |
| retention-days: 14 | |
| path: web |