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JoseEspinosaJoseEspinosa
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Really updating ALL snapshots
1 parent daf2acf commit 186f963

3 files changed

Lines changed: 69 additions & 3 deletions

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‎tests/bowtie2.nf.test.snap‎

Lines changed: 23 additions & 1 deletion
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@@ -3,6 +3,9 @@
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"content": [
44
215,
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{
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"ANNOTATE_BOOLEAN_PEAKS": {
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"sed": 4.7
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},
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"BAMTOOLS_FILTER": {
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"bamtools": "2.5.3",
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"samtools": 1.23
@@ -33,6 +36,10 @@
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"DEEPTOOLS_PLOTPROFILE": {
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"deeptools": "3.5.6"
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},
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"DESEQ2_QC": {
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"bioconductor-deseq2": "1.28.0",
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"r-base": "4.0.3"
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},
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"FASTQC": {
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"fastqc": "0.12.1"
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},
@@ -43,13 +50,25 @@
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"GENOME_BLACKLIST_REGIONS": {
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"bedtools": "2.31.1"
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},
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"GTF2BED": {
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"perl": "5.26.2"
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},
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"HOMER_ANNOTATEPEAKS": {
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"homer": 4.11
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},
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"IGV": {
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"python": "3.8.3"
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},
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"MACS3_CALLPEAK": {
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"macs3": "3.0.4"
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},
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"MACS3_CONSENSUS": {
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"R": "4.1.3",
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"python": "3.14.0"
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},
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"MULTIQC_CUSTOM_PEAKS": {
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"sed": 4.7
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},
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"PICARD_COLLECTMULTIPLEMETRICS": {
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"picard": "3.4.0"
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},
@@ -65,6 +84,9 @@
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"PLOT_MACS3_QC": {
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"R": "4.5.3"
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},
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"SAMPLESHEET_CHECK": {
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"python": "3.8.3"
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},
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"SAMTOOLS_FAIDX": {
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"samtools": "1.22.1"
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},
@@ -942,7 +964,7 @@
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"nf-test": "0.9.3",
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"nextflow": "25.04.7"
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},
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"timestamp": "2026-03-19T21:54:49.696269369"
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"timestamp": "2026-03-20T22:36:57.512559418"
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},
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"bowtie2 with stub": {
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"content": [

‎tests/chromap.nf.test.snap‎

Lines changed: 23 additions & 1 deletion
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@@ -3,6 +3,9 @@
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"content": [
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{
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"ANNOTATE_BOOLEAN_PEAKS": {
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"sed": 4.7
8+
},
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"BAMTOOLS_FILTER": {
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"bamtools": "2.5.3",
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"samtools": 1.23
@@ -25,6 +28,10 @@
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"DEEPTOOLS_PLOTPROFILE": {
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"deeptools": "3.5.6"
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},
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"DESEQ2_QC": {
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"bioconductor-deseq2": "1.28.0",
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"r-base": "4.0.3"
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},
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"FASTQC": {
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"fastqc": "0.12.1"
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},
@@ -35,13 +42,25 @@
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"GENOME_BLACKLIST_REGIONS": {
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"bedtools": "2.31.1"
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},
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"GTF2BED": {
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"perl": "5.26.2"
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},
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"HOMER_ANNOTATEPEAKS": {
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"homer": 4.11
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},
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"IGV": {
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"python": "3.8.3"
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},
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"MACS3_CALLPEAK": {
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"macs3": "3.0.4"
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},
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"MACS3_CONSENSUS": {
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"R": "4.1.3",
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"python": "3.14.0"
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},
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"MULTIQC_CUSTOM_PEAKS": {
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"sed": 4.7
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},
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"PICARD_COLLECTMULTIPLEMETRICS": {
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"picard": "3.4.0"
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},
@@ -57,6 +76,9 @@
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"PLOT_MACS3_QC": {
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"R": "4.5.3"
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},
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"SAMPLESHEET_CHECK": {
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"python": "3.8.3"
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},
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"SAMTOOLS_FAIDX": {
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"samtools": "1.22.1"
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},
@@ -938,7 +960,7 @@
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"nf-test": "0.9.3",
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"nextflow": "25.04.7"
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},
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"timestamp": "2026-03-19T20:24:48.730771365"
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"timestamp": "2026-03-20T22:56:58.445163531"
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},
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"chromap with stub": {
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"content": [

‎tests/default.nf.test.snap‎

Lines changed: 23 additions & 1 deletion
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"content": [
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{
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"ANNOTATE_BOOLEAN_PEAKS": {
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"sed": 4.7
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},
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"BAMTOOLS_FILTER": {
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"bamtools": "2.5.3",
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"samtools": 1.23
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"DEEPTOOLS_PLOTPROFILE": {
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"deeptools": "3.5.6"
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},
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"DESEQ2_QC": {
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"bioconductor-deseq2": "1.28.0",
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"r-base": "4.0.3"
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},
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"FASTQC": {
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"fastqc": "0.12.1"
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},
@@ -42,13 +49,25 @@
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"GENOME_BLACKLIST_REGIONS": {
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"bedtools": "2.31.1"
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},
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"GTF2BED": {
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"perl": "5.26.2"
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},
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"HOMER_ANNOTATEPEAKS": {
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"homer": 4.11
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},
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"IGV": {
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"python": "3.8.3"
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},
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"MACS3_CALLPEAK": {
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"macs3": "3.0.4"
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},
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"MACS3_CONSENSUS": {
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"R": "4.1.3",
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"python": "3.14.0"
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},
68+
"MULTIQC_CUSTOM_PEAKS": {
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"sed": 4.7
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},
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"PICARD_COLLECTMULTIPLEMETRICS": {
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"picard": "3.4.0"
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},
@@ -64,6 +83,9 @@
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"PLOT_MACS3_QC": {
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"R": "4.5.3"
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},
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"SAMPLESHEET_CHECK": {
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"python": "3.8.3"
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},
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"SAMTOOLS_FAIDX": {
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"samtools": "1.22.1"
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},
@@ -941,6 +963,6 @@
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"nf-test": "0.9.3",
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"nextflow": "25.04.7"
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},
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"timestamp": "2026-03-19T20:40:01.241519587"
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"timestamp": "2026-03-20T22:58:38.10424597"
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}
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}

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