RJournal.lyx

#LyX 2.0 created this file. For more info see http://www.lyx.org/
\lyxformat 413
\begin_document
\begin_header
\textclass RJournal
\use_default_options true
\begin_modules
knitr
\end_modules
\maintain_unincluded_children false
\language english
\language_package none
\inputencoding auto
\fontencoding global
\font_roman default
\font_sans default
\font_typewriter default
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100
\font_tt_scale 100

\graphics default
\default_output_format default
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize default
\use_geometry false
\use_amsmath 1
\use_esint 1
\use_mhchem 1
\use_mathdots 1
\cite_engine natbib_authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\use_refstyle 1
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\quotes_language english
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
\begin_inset Note Note
status open

\begin_layout Plain Layout
You have to put the body of your article inside the 
\begin_inset Quotes eld
\end_inset

article
\begin_inset Quotes erd
\end_inset

 enviroment defined by RJournal.sty.
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset ERT
status collapsed

\begin_layout Plain Layout


\backslash
begin{article}
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout

<<setup, include=FALSE>>=
\end_layout

\begin_layout Plain Layout

render_sweave() # use Schunk, Sinput and Soutput environments defined by
 RJournal
\end_layout

\begin_layout Plain Layout

set_header(highlight = '') # no need to 
\backslash
usepackage{Sweave}
\end_layout

\begin_layout Plain Layout

@
\end_layout

\end_inset


\end_layout

\begin_layout Title
Capitalized Title Here
\end_layout

\begin_layout Author
by Author A and Author B
\end_layout

\begin_layout Standard
\begin_inset Flex Abstract
status open

\begin_layout Plain Layout
An abstract of less than 150 words.
\end_layout

\end_inset


\end_layout

\begin_layout Section
Section title in sentence case
\end_layout

\begin_layout Standard
Write something here.
 A sample citation is 
\begin_inset CommandInset citation
LatexCommand citet
key "Lam94"

\end_inset

.
\end_layout

\begin_layout Section
R code chunks
\end_layout

\begin_layout Standard
Press 
\family sans
Ctrl+L
\family default
 and input R code chunks which will be compiled by the 
\series bold
knitr
\series default
 package (
\begin_inset Flex URL
status collapsed

\begin_layout Plain Layout

http://yihui.name/knitr/
\end_layout

\end_inset

).
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout

<<sample-chunk, echo=TRUE>>=
\end_layout

\begin_layout Plain Layout

x=1:10
\end_layout

\begin_layout Plain Layout

rev(x)
\end_layout

\begin_layout Plain Layout

summary(x)
\end_layout

\begin_layout Plain Layout

@
\end_layout

\end_inset


\end_layout

\begin_layout Standard
You can also plot your data; see Figure 
\begin_inset CommandInset ref
LatexCommand ref
reference "fig:sample-figure"

\end_inset

 for example.
\end_layout

\begin_layout Standard
\begin_inset Float figure
placement tbph
wide false
sideways false
status open

\begin_layout Plain Layout
\begin_inset ERT
status open

\begin_layout Plain Layout

<<sample-figure, fig.width=5, fig.height=3, out.width='.4
\backslash

\backslash
linewidth', fig.align='center'>>=
\end_layout

\begin_layout Plain Layout

par(mar = c(4,4,.1,.1))
\end_layout

\begin_layout Plain Layout

plot(x, pch=19, col=1:10)
\end_layout

\begin_layout Plain Layout

@
\end_layout

\end_inset


\end_layout

\begin_layout Plain Layout
\begin_inset Caption

\begin_layout Plain Layout
A sample figure.
\begin_inset CommandInset label
LatexCommand label
name "fig:sample-figure"

\end_inset


\end_layout

\end_inset


\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset Note Note
status open

\begin_layout Plain Layout
When you insert BibTeX bibliography here, do not use any bib styles.
 The R Journal has declared the style to be 
\begin_inset Quotes eld
\end_inset

abbrvnat
\begin_inset Quotes erd
\end_inset

.
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
bibfiles "biblio"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset Flex Address
status collapsed

\begin_layout Plain Layout
Author A
\begin_inset Newline newline
\end_inset

Press Ctrl+Enter to input
\begin_inset Newline newline
\end_inset

address here
\end_layout

\end_inset


\begin_inset Newline newline
\end_inset


\begin_inset Flex Email
status collapsed

\begin_layout Plain Layout
author.a@email
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset Flex Address
status collapsed

\begin_layout Plain Layout
Author B
\end_layout

\end_inset


\begin_inset Newline newline
\end_inset


\begin_inset Flex Email
status collapsed

\begin_layout Plain Layout
author.b@email
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset ERT
status collapsed

\begin_layout Plain Layout


\backslash
end{article}
\end_layout

\end_inset


\begin_inset Note Note
status open

\begin_layout Plain Layout
Note 
\backslash
begin{article} in the beginning of this article; now we close the 
\begin_inset Quotes eld
\end_inset

article
\begin_inset Quotes erd
\end_inset

 environment.
\end_layout

\end_inset


\end_layout

\end_body
\end_document