epmt/environment.yaml at main · NOAA-GFDL/epmt · GitHub

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# Conda development environment for epmt
#
# Prerequisites:
#   module load conda
#
# Create the environment:
#   conda env create -f environment.yaml
#
# Activate:
#   conda activate epmt
#
# Editable install (from the repo root, ~/Working/epmt):
#   pip install -e src/
#
# After pulling new commits, re-run the pip install line above if
# pyproject.toml dependencies changed.

name: epmt

channels:
  - conda-forge

dependencies:
  # 3.10/3.11 supported; 3.9 is EOL; 3.12 requires pandas 2.x + SQLAlchemy 2.x (issue #105)
  - python>=3.10,<3.12
  - sqlite>=3.49           # epmt's DB layer requires SQLite >= 3.49

  # --- runtime dependencies (mirrors src/pyproject.toml) -----------------
  - conda-forge::alembic
  - conda-forge::flask
  - conda-forge::kneed
  - conda-forge::numpy==1.26.4
  - conda-forge::pandas==1.5.3
  - conda-forge::plotly
  - conda-forge::psycopg2          # conda-forge ships psycopg2 (not -binary)
  - conda-forge::py-cpuinfo
  - conda-forge::pyod
  - conda-forge::python-daemon
  - conda-forge::pytz
  - conda-forge::scikit-learn
  - conda-forge::scipy
  - conda-forge::six
  - conda-forge::sqlalchemy==1.4.54

  # --- dev / test extras -------------------------------------------------
  - conda-forge::pytest
  - conda-forge::pytest-cov
  - conda-forge::pylint
  - pip

#  # --- notebook extras -------------------------------------------------- (TESTED, WORKS!)
#  - conda-forge::ipykernel
#  - conda-forge::ipython
#  - conda-forge::ipywidgets
#  - conda-forge::jupyter
#  - conda-forge::jupyter_client
#  - conda-forge::jupyter_console
#  - conda-forge::jupyter_core
#  - conda-forge::jupyter_server<2
#  - conda-forge::notebook<7
#  - conda-forge::jupyterlab<4        # must stay <4 while notebook is <7
#  - conda-forge::qtconsole

#  # --- ui extras -------------------------------------------------- (NOT TESTED)
#  - conda-forge::dash
#  - conda-forge::dash_bootstrap_components
#  - conda-forge::dash_daq
#  - conda-forge::dash_table

#  # --- docs extras -------------------------------------------------- (NOT TESTED)
#  - conda-forge::livereload
#  - conda-forge::mkdocs
#  - conda-forge::mkdocs_git_committers_plugin
#  - conda-forge::mkdocs_theme_bootstrap4

#   # --- build extras -------------------------------------------------- (NOT TESTED)
#   - conda-forge::pyinstaller==5.7.0
#   - conda-forge::pyinstaller-hooks-contrib==2023.11

  - pip:
    - -e src/              # editable install of epmt into this environment