epmt/meta.yaml at main · NOAA-GFDL/epmt · GitHub

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package:
  name: epmt
  # When building locally without a tag, the version will be "develop".
  version: '{{ environ.get("GIT_DESCRIBE_TAG", "develop") }}'

source:
  path: .

build:
  script:
    # Install from the src/ subdirectory, where pyproject.toml lives.
    - {{ PYTHON }} -m pip install src/ -vv
  noarch: python
  number: 0

requirements:
  build:
    # 3.9 is EOL; 3.10/3.11 supported; 3.12+ needs pandas 2.x, SQLAlchemy 2.x (issue #105)
    - python>=3.10,<3.12
    - pip
    - setuptools>=61,<69
    - wheel>=0.29.0
  host:
    - python>=3.10,<3.12
    - pip
    - setuptools>=61,<69
  run:
    - python>=3.10,<3.12
    - sqlite>=3.49
    - conda-forge::alembic
    - conda-forge::flask
    - conda-forge::kneed
    - conda-forge::numpy==1.26.4
    - conda-forge::pandas==1.5.3
    - conda-forge::plotly
    - conda-forge::psycopg2
    - conda-forge::py-cpuinfo
    - conda-forge::pyod
    - conda-forge::python-daemon
    - conda-forge::pytz
    - conda-forge::scikit-learn
    - conda-forge::scipy
    - conda-forge::six
    - conda-forge::sqlalchemy==1.4.54

test:
  requires:
    - conda-forge::pytest
  imports:
    - epmt
  commands:
    - epmt --help
    # epmt check verifies papiex/SLURM/perf_event which are unavailable in the
    - epmt -V
    - export site_pkgs=$(python3 -c 'import site; print(site.getsitepackages()[0]);')
    - epmt -vv check || echo "epmt check predictably failed (GUARDED)"
    - pytest -v ${site_pkgs}/epmt/test/test_anysh.py
    - pytest -v ${site_pkgs}/epmt/test/test_check.py || echo "unit test test_check failed (GUARDED)"
    - pytest -v ${site_pkgs}/epmt/test/test_cmds.py
    - pytest -v ${site_pkgs}/epmt/test/test_dbcare.py
 #   - pytest -v ${site_pkgs}/epmt/test/test_db_migration.py # SKIPPED
    - pytest -v ${site_pkgs}/epmt/test/test_db_schema.py
    - pytest -v ${site_pkgs}/epmt/test/test_explore.py
    - pytest -v ${site_pkgs}/epmt/test/test_lib.py
    - pytest -v ${site_pkgs}/epmt/test/test_outliers.py
    - pytest -v ${site_pkgs}/epmt/test/test_query.py
    - pytest -v ${site_pkgs}/epmt/test/test_run.py
    - pytest -v ${site_pkgs}/epmt/test/test_settings.py
    - pytest -v ${site_pkgs}/epmt/test/test_stat.py
    - pytest -v ${site_pkgs}/epmt/test/test_submit.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_annotate.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_basic.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_collate_tsv.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_concat.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_daemon.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_escape.py
    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_explore.py
#    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_kernel_compile.py
#    - pytest -v ${site_pkgs}/epmt/test/integration/test_integration_slurm.py

about:
  home: https://github.com/NOAA-GFDL/epmt
  license: MIT
  license_file: LICENSE
  summary: Experiment Process and Metadata Toolkit