Skip to content

Commit a2fe07d

Browse files
authored
Amoradza/rearrange (#1025)
### Description <!-- Provide a detailed description of the changes in this PR --> Update evo2 pretrain to use hyena rearrange. ### Type of changes <!-- Mark the relevant option with an [x] --> - [ ] Bug fix (non-breaking change which fixes an issue) - [ ] New feature (non-breaking change which adds functionality) - [ ] Refactor - [ ] Documentation update - [ ] Other (please describe): ### CI Pipeline Configuration Configure CI behavior by applying the relevant labels: - [SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci) - Skip all continuous integration tests - [INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests) - Execute notebook validation tests in pytest - [INCLUDE_SLOW_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_slow_tests) - Execute tests labelled as slow in pytest for extensive testing > [!NOTE] > By default, the notebooks validation tests are skipped unless explicitly enabled. #### Authorizing CI Runs We use [copy-pr-bot](https://docs.gha-runners.nvidia.com/apps/copy-pr-bot/#automation) to manage authorization of CI runs on NVIDIA's compute resources. * If a pull request is opened by a trusted user and contains only trusted changes, the pull request's code will automatically be copied to a pull-request/ prefixed branch in the source repository (e.g. pull-request/123) * If a pull request is opened by an untrusted user or contains untrusted changes, an NVIDIA org member must leave an `/ok to test` comment on the pull request to trigger CI. This will need to be done for each new commit. ### Usage <!--- How does a user interact with the changed code --> ```python TODO: Add code snippet ``` ### Pre-submit Checklist <!--- Ensure all items are completed before submitting --> - [ ] I have tested these changes locally - [ ] I have updated the documentation accordingly - [ ] I have added/updated tests as needed - [ ] All existing tests pass successfully --------- Signed-off-by: amoradzadeh <amoradzadeh@nvidia.com>
1 parent c498ede commit a2fe07d

2 files changed

Lines changed: 4 additions & 5 deletions

File tree

3rdparty/NeMo

Submodule NeMo updated from 29c230b to ee0be11

ci/benchmarks/partial-conv/evo2_pretrain.yaml

Lines changed: 3 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -15,8 +15,8 @@ script_args:
1515
# See jet/core/configs.py for the specification of the configuration class
1616
workspace: /workspace/bionemo2
1717
data_path: /data/evo2
18-
artefacts_url: https://gitlab-master.nvidia.com/api/v4/projects/clara-discovery%2Fcuhyena/jobs/172596829/artifacts/dist/
19-
file_name_wheel: cuhyena-0.1-cp312-cp312-linux_x86_64.whl
18+
artefacts_url: https://__token__:${JET_GITLAB_TOKEN}@gitlab-master.nvidia.com/api/v4/projects/180496/packages/pypi/simple
19+
file_name_wheel: cuhyena==v0.2.3+cuda12.9
2020
model: evo2
2121
variant: train
2222
config_name: 1b
@@ -40,8 +40,7 @@ script_args:
4040
script: |-
4141
INSTALL_FLAG="/tmp/install_done_${{SLURMD_NODENAME}}";
4242
if [ "$SLURM_LOCALID" = "0" ]; then
43-
curl --location --header "PRIVATE-TOKEN:$JET_GITLAB_TOKEN" "${artefacts_url}/${file_name_wheel}" --output ${file_name_wheel}
44-
pip install ${file_name_wheel}
43+
pip install ${file_name_wheel} --index-url ${artefacts_url}
4544
touch $INSTALL_FLAG
4645
fi
4746
# All ranks wait until install flag file appears

0 commit comments

Comments
 (0)