envo.md

layout	ontology_detail
id	envo
title	Environment Ontology
contact	email github label orcid pier.buttigieg@awi.de pbuttigieg Pier Luigi Buttigieg 0000-0002-4366-3088
dependencies	id chebi id foodon id go id ncbitaxon id pco id po id ro id uberon
depicted_by	/images/envo.png
description	An ontology of environmental systems, components, and processes.
domain	environment
homepage	http://environmentontology.org/
license	label url CC0 1.0 http://creativecommons.org/publicdomain/zero/1.0/
page	https://github.com/EnvironmentOntology/envo
preferredPrefix	ENVO
products	id title envo.owl main ENVO OWL release id title envo.json ENVO in obographs JSON format id title envo.obo ENVO in OBO Format. May be lossy id title envo/subsets/envo-basic.obo OBO-Basic edition of ENVO id title envo/subsets/envoEmpo.owl Earth Microbiome Project subset id title homepage envo/subsets/EnvO-Lite-GSC.obo GSC Lite subset of ENVO http://environmentontology.org/downloads
publications	id title preferred https://doi.org/10.1186/2041-1480-4-43 The environment ontology: contextualising biological and biomedical entities true id title https://doi.org/10.1186/s13326-016-0097-6 The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
repository	https://github.com/EnvironmentOntology/envo
tracker	https://github.com/EnvironmentOntology/envo/issues/
usages	description examples type user describing species habitats description url Pseudobarbus burchelli (Tradou Redfin) is a species of bony fishes in the family Cyprinidae. They are associated with freshwater habitat. Individuals can grow to 13.5 cm. They have sexual reproduction. http://eol.org/pages/211700/data data-annotation http://eol.org description type user describing stomach contents data-annotation http://globalbioticinteractions.org description seeAlso type user annotating datasets in data repositories http://blogs.nature.com/scientificdata/2015/12/17/isa-explorer/ dataset-description http://www.nature.com/sdata/ description examples user Samples collected during Tara Oceans expedition are annotated with ENVO description url Sample collected during the Tara Oceans expedition (2009-2013) at station TARA_004 (latitudeN=36.5533, longitudeE=-6.5669) https://www.ebi.ac.uk/metagenomics/projects/ERP001736/samples/ERS487899 http://oceans.taraexpeditions.org/en/ description examples user Annotation of habitats of microbes description url Annotation of habitat of Pseudovibrio sp. FO-BEG1 to marine environment https://www.ncbi.nlm.nih.gov/nuccore/NC_016642 https://www.ncbi.nlm.nih.gov/ description examples user Annotation and semantic search over microbial data sets description url Example metadata of a sample of marine water near Lisboa, taken as part of the Ocean Sampling Day Project (https://www.microb3.eu/osd.html). ENVO is used for the fields environmental feature, material, and biome. https://www.planetmicrobe.org/project/#/samples/200 https://www.planetmicrobe.org/project/
activity_status	active

EnvO is a community ontology for the concise, controlled description of environments.