eo.md

layout	ontology_detail
id	eo
title	Plant Environment Ontology
contact	email github label orcid jaiswalp@science.oregonstate.edu jaiswalp Pankaj Jaiswal 0000-0002-1005-8383
depicted_by	http://planteome.org/sites/default/files/garland_logo.PNG
description	A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.
domain	environment
homepage	http://planteome.org/
is_obsolete	true
license	label url CC BY 4.0 https://creativecommons.org/licenses/by/4.0/
page	http://browser.planteome.org/amigo/term/EO:0007359
products	id eo.owl id eo.obo
publications	id title https://www.ncbi.nlm.nih.gov/pubmed/22847540 Ontologies as integrative tools for plant science.
replaced_by	peco
repository	https://github.com/Planteome/plant-environment-ontology
tracker	https://github.com/Planteome/plant-environment-ontology/issues
usages	description examples user Planteome uses EO to describe traits for genes and germplasm description url Genes and proteins annotated to cold temperature regiment http://browser.planteome.org/amigo/term/EO:0007174 http://planteome.org/ description examples user Gramene uses EO for the annotation of plant genes and QTLs description url Gramene annotations to cold temperature regiment http://archive.gramene.org/db/ontology/search?id=EO:0007174 http://gramene.org/
activity_status	inactive

A structured, controlled vocabulary for the representation of plant environmental conditions.

Migration Guide from EO to PECO

If you are using classes like EO:nnnnnn then you should be able to substitute this for PECO:nnnnnn, as all of the numeric parts of the ID are preserved.

For a more robust mechanism, peco.obo contains alt_ids, and peco.owl contains the equivalent replaced_by assertions, which point from an obsoleted EO class to the corresponding PECO class.

If you have any issues you can report them here:

Planteome/plant-experimental-conditions-ontology#95