go.md

layout	ontology_detail
id	go
title	Gene Ontology
browsers	title label url Gene Ontology AmiGO 2 Browser AmiGO http://amigo.geneontology.org/amigo/term/GO:0008150#display-lineage-tab
contact	email github label orcid suzia@stanford.edu suzialeksander Suzi Aleksander 0000-0001-6787-2901
dependencies	id subset cl go/extensions/cl_import.owl id title connects description publications type go/extensions/go-bridge-to-nifstd.owl GO bridge to NIFSTD id nifstd id go Bridging axioms between nifstd and go id title http://www.ncbi.nlm.nih.gov/pubmed/24093723 The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. BridgeOntology id subset ncbitaxon go/extensions/ncbitaxon_import.owl id subset ro go/extensions/ro_import.owl id subset uberon go/extensions/uberon_import.owl
depicted_by	/images/go_logo.png
description	An ontology for describing the function of genes and gene products
domain	biological systems
homepage	http://geneontology.org/
in_foundry_order	1
license	label url CC BY 4.0 https://creativecommons.org/licenses/by/4.0/
preferredPrefix	GO
products	id title description page go.owl GO (OWL edition) The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies http://geneontology.org/page/download-ontology id title description page go.obo GO (OBO Format edition) Equivalent to go.owl, in obo format http://geneontology.org/page/download-ontology id title description page go.json GO (JSON edition) Equivalent to go.owl, in obograph json format https://github.com/geneontology/obographs/ id title description page go/extensions/go-plus.owl GO-Plus The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies http://geneontology.org/page/download-ontology id title description page go/go-base.owl GO Base Module The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves http://geneontology.org/page/download-ontology id title description page go/extensions/go-plus.json GO-Plus As go-plus.owl, in obographs json format https://github.com/geneontology/obographs/ id title description page go/go-basic.obo GO-Basic, Filtered, for use with legacy tools Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies. http://geneontology.org/page/download-ontology id title description page go/go-basic.json GO-Basic, Filtered, for use with legacy tools (JSON) As go-basic.obo, in json format http://geneontology.org/page/download-ontology id title description page go/extensions/go-taxon-groupings.owl GO Taxon Groupings Classes added to ncbitaxon for groupings such as prokaryotes http://geneontology.org/page/download-ontology id title description page go/snapshot/go.owl GO (OWL edition), daily snapshot release Equivalent to go.owl, but released daily. Note the snapshot release is not archived. http://geneontology.org/page/download-ontology id title description page go/snapshot/go.obo GO (OBO Format edition), daily snapshot release Equivalent to go.owl, but released daily. Note the snapshot release is not archived. http://geneontology.org/page/download-ontology
publications	id title https://www.ncbi.nlm.nih.gov/pubmed/10802651 Gene ontology: tool for the unification of biology. The Gene Ontology Consortium id title https://www.ncbi.nlm.nih.gov/pubmed/33290552 The Gene Ontology resource: enriching a GOld mine
repository	https://github.com/geneontology/go-ontology
tags	biology
taxon	id label NCBITaxon:1 All life
tracker	https://github.com/geneontology/go-ontology/issues/
twitter	news4go
usages	description examples type user The GO ontology is used by the GO consortium for functional annotation of genes description url annotations to transmembrane transport http://amigo.geneontology.org/amigo/term/GO:0055085 annotation http://geneontology.org description examples type user Uniprot uses GO to show the function of proteins description url functional annotations of human Sonic hedgehog protein https://www.uniprot.org/uniprot/Q15465#function annotation https://www.uniprot.org description examples type user Reactome annotates activities, pathways, and cellular localization using GO description url protein tyrosine kinase activity of an EGFR complex https://reactome.org/content/detail/R-HSA-177934 annotation https://reactome.org description examples type user The Alliance of Genome Resources uses GO for model organism gene function annotation description url Functional summary of C elegans nsy-1 gene https://www.alliancegenome.org/gene/WB:WBGene00003822#function---go-annotations description url Gene Ontology Causal Activity Models for C elegans nsy-1 gene https://www.alliancegenome.org/gene/WB:WBGene00003822#pathways annotation https://www.alliancegenome.org description examples type user Rhea uses GO to describe individual biochemical reactions description url Glutamine scyllo-inositol transaminase reaction and associated GO term https://www.rhea-db.org/rhea/22920 mapping https://www.rhea-db.org
activity_status	active

The goal of the GeneOntology (GO) project is to provide a uniformway to describe the functions of gene products from organisms across all kingdoms of life and thereby enable analysis of genomic data