hancestro.md

layout	ontology_detail
id	hancestro
title	Human Ancestry Ontology
contact	email github label orcid dwelter.ontologist@gmail.com daniwelter Danielle Welter 0000-0003-1058-2668
description	The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.
domain	organisms
homepage	https://ebispot.github.io/hancestro/
license	label url CC BY 4.0 https://creativecommons.org/licenses/by/4.0/
preferredPrefix	HANCESTRO
products	id title description hancestro.owl HANCESTRO The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies id title description hancestro-base.owl HANCESTRO Base Base version of HANCESTRO
publications	id title https://www.ncbi.nlm.nih.gov/pubmed/29448949 A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog
repository	https://github.com/EBISPOT/hancestro
tags	ancestry
tracker	https://github.com/EBISPOT/hancestro/issues
usages	description examples user The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. description url Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false http://www.ebi.ac.uk/efo description examples user The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. description url Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false https://genepio.org/ description examples user FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. description url Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data https://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false http://foodon.org
activity_status	active

Summary

The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.

• Home: https://github.com/EBISPOT/hancestro

Download

Use the following URI to download this ontology

• http://purl.obolibrary.org/obo/hancestro.owl
• This should point to: https://raw.githubusercontent.com/EBISPOT/hancestro/main/hancestro.owl

A non-reasoned base version of the ontology is available at https://raw.githubusercontent.com/EBISPOT/hancestro/main/hancestro-base.owl

A version of HANCESTRO with BFO upper classes is also available at https://raw.githubusercontent.com/EBISPOT/hancestro/main/hancestro-full.owl

Browsing

• Default browsing in Ontobee: http://www.ontobee.org/ontology/hancestro
• Browsing in OLS: https://www.ebi.ac.uk/ols/ontologies/hancestro
• Browsing in NCBO BioPortal: https://bioportal.bioontology.org/ontologies/HANCESTRO