adding MsLeg Data by mariiakrasniuk · Pull Request #424 · Project-MONAI/research-contributions

mariiakrasniuk · 2025-11-16T18:31:43Z

Summary by CodeRabbit

New Features
- Added dataset configuration for MS lesion segmentation, defining imaging modalities (T1, T2, FLAIR), label mappings, and organizing 93 training and 22 validation samples for improved dataset management and processing.

coderabbitai · 2025-11-16T18:33:42Z

Caution

Review failed

The pull request is closed.

Walkthrough

Two dataset descriptor JSON files added for MS lesion segmentation using UNETR model format, defining modality mappings (T1, T2, FLAIR), label classes (background, lesion), and file paths for training and validation data cohorts.

Changes

Cohort / File(s)	Change Summary
Dataset Descriptors for UNETR MS Lesion Segmentation `UNETR/MSLesSeg_UNETR/dataset.json`, `UNETR/MSLesSeg_UNETR/dataset_mslesseg.json`	Added two JSON configuration files defining dataset metadata, imaging modalities (T1, T2, FLAIR), label schema (0: background, 1: lesion), and corresponding training/validation data paths. The second file specifies 93 training and 22 test samples with explicit per-subject modality and label file mappings.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~8 minutes

Verify consistency of file path references across both descriptor files
Confirm modality mappings and label definitions align with dataset structure
Validate training/validation split counts (93 training, 22 test samples) and path completeness

Poem

🐰 Hop, hop! Two descriptors appear,
MS lesions mapped crystal clear,
T1, T2, FLAIR in sight—
Data organized just right! ✨

✨ Finishing touches

🧪 Generate unit tests (beta)

Create PR with unit tests
Post copyable unit tests in a comment

📜 Recent review details

Configuration used: CodeRabbit UI

Review profile: CHILL

Plan: Pro

Cache: Disabled due to data retention organization setting

Knowledge base: Disabled due to data retention organization setting

📥 Commits

Reviewing files that changed from the base of the PR and between 21ed8e5 and 21fdfde.

⛔ Files ignored due to path filters (230)

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📒 Files selected for processing (2)

UNETR/MSLesSeg_UNETR/dataset.json (1 hunks)
UNETR/MSLesSeg_UNETR/dataset_mslesseg.json (1 hunks)

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adding MsLeg Data

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mariiakrasniuk closed this Nov 16, 2025

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adding MsLeg Data#424

adding MsLeg Data#424
mariiakrasniuk wants to merge 1 commit intoProject-MONAI:mainfrom
mariiakrasniuk:adding_dataset

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mariiakrasniuk commented Nov 16, 2025 •

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