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Clean up CITATION.cff by removing unnecessary fields
Removed repository code, URL, abstract, keywords, and license URL from CITATION.cff.
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CITATION.cff

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@@ -50,52 +50,6 @@ authors:
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- family-names: Warinner
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given-names: Christina
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orcid: 'https://orcid.org/0000-0002-4528-5877'
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repository-code: >-
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https://github.com/SPAAM-community/little-book-of-smiley-plots/
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url: >-
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https://www.spaam-community.org/little-book-of-smiley-plots/
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abstract: >
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A key part of any ancient DNA project is to show that the
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DNA is exactly that - that the DNA is ancient, rather than
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from modern contamination.
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A key authentication method is to show the presence of
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elevated C to T deamination patterns (and the
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complementary G to A) at the end of DNA molecules - known
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as damage patterns - originally reported by (Briggs et al.
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2007).
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These patterns can be plotted in what have been
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colloquially known as ’Smiley Plots. However, there can be
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a wide range of smiley plots, some which show valid
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ancient DNA, and others that do not - either due to not
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actually having true ancient DNA but also from laboratory
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and/or bioinformatic artifacts.
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This book aims to act as a reference guide to interpreting
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ancient DNA damage plots, providing a wide range of
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example ‘smiley plots’, with descriptions of what the
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describe and what can cause them. As an added bit of fun,
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each type of ‘smiley plot’ comes with a artistic
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interpretation of the line shape contributed by members of
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the ancient DNA community.
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keywords:
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- ancient DNA
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- aDNA
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- palaeogenetics
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- palaeogenomics
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- archaeogenetics
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- archaeogenomics
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- ancient metagenomics
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- microbiome
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- pathogen
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- bioinformatics
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- reference guide
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- damage patterns
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- misincorporation patterns
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license: CC0
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version: 2025
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date-released: '2025-09-21'

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