Merge pull request #672 from MaxUlysse/Singularity

fix expected output of PullSingularityContainers process

Author: maxulysse

CHANGELOG.md

@@ -14,6 +14,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 ### `Fixed`
 
 -   [#665](https://github.com/SciLifeLab/Sarek/pull/665) - Input bam file now has always the same name (whether it is from a single fastq pair or multiple) in the MarkDuplicates process, so metrics too
+-   [#672](https://github.com/SciLifeLab/Sarek/pull/672) - process `PullSingularityContainers` from `buildContainers.nf` now expect a file with the correct `.simg` extension for singularity images, and no longer the `.img` one.
 
 ## [2.2.1] - 2018-10-04
 

buildContainers.nf

@@ -92,7 +92,7 @@ process PullSingularityContainers {
     val container from singularityContainers
 
   output:
-    file("${container}-${params.tag}.img") into imagePulled
+    file("${container}-${params.tag}.simg") into imagePulled
 
   when: params.singularity