diff --git a/repeats/wgs_calling_regions.hg38.bed b/repeats/wgs_calling_regions.hg38.bed index 69aab1899a..c55770a016 100644 --- a/repeats/wgs_calling_regions.hg38.bed +++ b/repeats/wgs_calling_regions.hg38.bed @@ -1,356 +1,356 @@ -chr1 10000 207666 seconds 47.3 -chr1 257666 297968 seconds 29.0 -chr1 347968 535988 seconds 23.2 -chr1 585988 2702781 seconds 352.0 -chr1 2746290 12954384 seconds 871.0 -chr1 13004384 16799163 seconds 880.0 -chr1 16849163 29552233 seconds 1052.0 -chr1 29553835 121976459 seconds 6817.0 -chr1 122026459 124977944 seconds 13117.0 -chr1 124978326 125130246 seconds 237.0 -chr1 125131847 125171347 seconds 212.0 -chr1 125173583 125184587 seconds 2395.0 -chr1 143184587 223558935 seconds 17981.0 -chr1 223608935 228558364 seconds 429.0 -chr1 228608364 248946422 seconds 2030.0 -chr2 10000 16145119 seconds 1453.0 -chr2 16146119 32867130 seconds 1207.0 -chr2 32868130 32916625 seconds 39.8 -chr2 32917625 89330679 seconds 4412.0 -chr2 89530679 89685992 seconds 95.0 -chr2 89753992 90402511 seconds 5401.0 -chr2 91402511 92138145 seconds 775.0 -chr2 92188145 94090557 seconds 349.0 -chr2 94140557 94293015 seconds 189.0 -chr2 94496015 97439618 seconds 742.0 -chr2 97489618 238903659 seconds 10617.0 -chr2 238904047 242183529 seconds 306.0 -chr3 10000 90565295 seconds 7852.0 -chr3 90568828 90722458 seconds 433.0 -chr3 90772458 91249905 seconds 844.0 -chr3 91256421 91257890 seconds 23.8 -chr3 91260180 91265381 seconds 24.5 -chr3 91276994 91282175 seconds 25.1 -chr3 91282734 93655574 seconds 184.0 -chr3 93705574 198235559 seconds 8267.0 -chr4 10000 1429358 seconds 196.0 -chr4 1434206 1435794 seconds 19.8 -chr4 1441552 8797477 seconds 783.0 -chr4 8816477 9272916 seconds 169.0 -chr4 9322916 31819295 seconds 1956.0 -chr4 31832569 32833016 seconds 195.0 -chr4 32839016 49336924 seconds 5417.0 -chr4 49486924 49658100 seconds 881.0 -chr4 49708100 51743951 seconds 164.0 -chr4 51793951 58878793 seconds 677.0 -chr4 58921381 190123121 seconds 10726.0 -chr4 190173121 190204555 seconds 880.0 -chr5 10000 17530548 seconds 1700.0 -chr5 17580548 46435900 seconds 2292.0 -chr5 46485900 47069162 seconds 137.0 -chr5 47073730 47079733 seconds 20.0 -chr5 47082080 47300585 seconds 237.0 -chr5 47306086 47309084 seconds 35.9 -chr5 49591469 49592920 seconds 29.5 -chr5 49599323 49603131 seconds 1756.0 -chr5 49609714 49611721 seconds 29.5 -chr5 49612096 49618994 seconds 29.9 -chr5 49621605 49628165 seconds 52.7 -chr5 49630729 49633793 seconds 132.0 -chr5 49641815 49650573 seconds 62.0 -chr5 49656261 49661871 seconds 791.0 -chr5 49666173 50059807 seconds 884.0 -chr5 50109807 139452659 seconds 6531.0 -chr5 139453659 155760324 seconds 1153.0 -chr5 155761324 181478259 seconds 1965.0 -chr6 60000 58453888 seconds 6790.0 -chr6 58553888 59829934 seconds 57.6 -chr6 60229934 61357029 seconds 228.0 -chr6 61363066 61370554 seconds 25.3 -chr6 61371372 95020790 seconds 2934.0 -chr6 95070790 167591393 seconds 5500.0 -chr6 167641393 170745979 seconds 355.0 -chr7 10000 237846 seconds 78.0 -chr7 240242 58119653 seconds 5157.0 -chr7 58169653 60828234 seconds 207.0 -chr7 60878234 61327788 seconds 284.0 -chr7 61377788 61528020 seconds 68.0 -chr7 61578020 61964169 seconds 49.6 -chr7 61967063 61976104 seconds 23.7 -chr7 62026104 62456779 seconds 299.0 -chr7 62506779 143650804 seconds 6802.0 -chr7 143700804 159335973 seconds 1757.0 -chr8 60000 7617127 seconds 1265.0 -chr8 7667127 12234345 seconds 675.0 -chr8 12284345 43983744 seconds 2926.0 -chr8 44033744 45877265 seconds 56.0 -chr8 45927265 85664222 seconds 2949.0 -chr8 85714222 145078636 seconds 4430.0 -chr9 10000 41225986 seconds 4604.0 -chr9 41229378 41237752 seconds 295.0 -chr9 41238504 43222167 seconds 842.0 -chr9 43236167 43263290 seconds 40.3 -chr9 43263820 43270944 seconds 20.1 -chr9 43274935 43276248 seconds 19.6 -chr9 43276457 43281323 seconds 19.4 -chr9 43282956 43332174 seconds 25.0 -chr9 43333269 43370405 seconds 25.4 -chr9 43371325 43377453 seconds 19.5 -chr9 43382279 45518558 seconds 126.0 -chr9 60518558 60688432 seconds 105.0 -chr9 60738432 60779521 seconds 26.2 -chr9 60829521 61003887 seconds 31.0 -chr9 61053887 61231966 seconds 35.3 -chr9 61281966 61468808 seconds 30.8 -chr9 61518808 61735368 seconds 85.0 -chr9 61785368 62149738 seconds 99.0 -chr9 62249738 62748832 seconds 63.0 -chr9 62798832 62958371 seconds 886.0 -chr9 63008371 63202862 seconds 36.5 -chr9 63252862 63492264 seconds 84.0 -chr9 63542264 63918447 seconds 1286.0 -chr9 63968447 64135013 seconds 95.0 -chr9 64185013 64215162 seconds 25.6 -chr9 64315162 64998124 seconds 111.0 -chr9 65048124 65080082 seconds 49.0 -chr9 65130082 65325123 seconds 58.6 -chr9 65375123 65595191 seconds 105.0 -chr9 65645191 66391387 seconds 163.0 -chr9 66591387 67920552 seconds 237.0 -chr9 68220552 134183092 seconds 5038.0 -chr9 134185536 138334717 seconds 415.0 -chr10 10000 38529907 seconds 3947.0 -chr10 38573338 38906036 seconds 462.0 -chr10 38911580 38913438 seconds 43.8 -chr10 38918269 39229918 seconds 475.0 -chr10 39230136 39409792 seconds 43.7 -chr10 39410237 39585287 seconds 89.0 -chr10 39590435 39593013 seconds 13.4 -chr10 39597435 39602699 seconds 18.9 -chr10 39606089 39613189 seconds 19.4 -chr10 39615618 39622353 seconds 46.0 -chr10 39625274 39636682 seconds 48.9 -chr10 39686682 41593521 seconds 236.0 -chr10 41693521 41916265 seconds 2541.0 -chr10 42066265 47780368 seconds 1594.0 -chr10 47870368 124121200 seconds 5748.0 -chr10 124121502 133690466 seconds 2071.0 -chr10 133740466 133787422 seconds 23.2 -chr11 60000 50821348 seconds 4474.0 -chr11 51078348 54425074 seconds 247.0 -chr11 54525074 70955696 seconds 1383.0 -chr11 71055696 87978202 seconds 1278.0 -chr11 88002896 135076622 seconds 3760.0 -chr12 10000 7083650 seconds 690.0 -chr12 7084650 34719407 seconds 2957.0 -chr12 34769407 34822289 seconds 30.4 -chr12 34829237 37185252 seconds 236.0 -chr12 37235252 37240944 seconds 30.5 -chr12 37245716 37255332 seconds 30.1 -chr12 37257055 37379851 seconds 46.7 -chr12 37380460 132223362 seconds 6946.0 -chr12 132224362 133265309 seconds 158.0 -chr13 16000000 18051248 seconds 2816.0 -chr13 18171248 18358106 seconds 894.0 -chr13 18408106 86202979 seconds 5932.0 -chr13 86252979 111703855 seconds 2239.0 -chr13 111753855 111793441 seconds 24.5 -chr13 111843441 113673020 seconds 217.0 -chr13 113723020 114354328 seconds 110.0 -chr14 16022637 16053976 seconds 35.7 -chr14 16054459 16061677 seconds 19.2 -chr14 16061993 16086625 seconds 24.6 -chr14 16089562 16105376 seconds 180.0 -chr14 16113232 16130858 seconds 104.0 -chr14 16133335 16140527 seconds 78.0 -chr14 16400163 16404348 seconds 61.0 -chr14 18223523 18712644 seconds 101.0 -chr14 18862644 19511713 seconds 186.0 -chr14 19611713 106883718 seconds 6997.0 -chr15 17000000 19725254 seconds 390.0 -chr15 19775254 20689304 seconds 1014.0 -chr15 20729746 21193490 seconds 85.0 -chr15 21242090 21778502 seconds 136.0 -chr15 21828502 22308242 seconds 122.0 -chr15 22358242 23226874 seconds 127.0 -chr15 23276874 84270066 seconds 4632.0 -chr15 84320066 101981189 seconds 1542.0 -chr16 10000 18436486 seconds 1808.0 -chr16 18486486 33214595 seconds 1246.0 -chr16 33264595 33392411 seconds 195.0 -chr16 33442411 34289329 seconds 509.0 -chr16 34339329 34521510 seconds 30.6 -chr16 34571510 34576805 seconds 2587.0 -chr16 34580965 34584085 seconds 1578.0 -chr16 34584622 36260386 seconds 5024.0 -chr16 36260628 36261158 seconds 19.6 -chr16 36311158 38269096 seconds 100.0 -chr16 38275758 38280682 seconds 19.1 -chr16 46380682 90228345 seconds 13919.0 -chr17 60000 448188 seconds 118.0 -chr17 488987 490395 seconds 19.4 -chr17 491111 21795850 seconds 2844.0 -chr17 21814103 21984549 seconds 263.0 -chr17 21985100 21992061 seconds 40.9 -chr17 22042061 22089188 seconds 132.0 -chr17 22089410 22763679 seconds 720.0 -chr17 22813679 26627010 seconds 2332.0 -chr17 26627349 26640334 seconds 25.3 -chr17 26640620 26643468 seconds 26.5 -chr17 26643843 26698590 seconds 41.6 -chr17 26698998 26720420 seconds 99.0 -chr17 26721376 26735204 seconds 74.0 -chr17 26735774 26820065 seconds 239.0 -chr17 26820266 26859724 seconds 51.0 -chr17 26860166 26885980 seconds 158.0 -chr17 26935980 81742542 seconds 4425.0 -chr17 81792542 81796281 seconds 20.5 -chr17 81797727 81798717 seconds 19.8 -chr17 81799133 83247441 seconds 180.0 -chr18 10000 15410899 seconds 4044.0 -chr18 15460899 15788380 seconds 89.0 -chr18 15791047 20564714 seconds 137.0 -chr18 20571466 20830724 seconds 57.4 -chr18 20831341 20861206 seconds 30.0 -chr18 20911206 46969912 seconds 1847.0 -chr18 47019912 54536574 seconds 697.0 -chr18 54537528 80263285 seconds 2319.0 -chr19 60000 24448980 seconds 2428.0 -chr19 24891356 24898313 seconds 148.0 -chr19 24904771 24908589 seconds 29.9 -chr19 27240874 58607616 seconds 3286.0 -chr20 60000 63215 seconds 24.3 -chr20 63840 26364240 seconds 2245.0 -chr20 26365414 26382164 seconds 29.9 -chr20 26382616 26386232 seconds 19.4 -chr20 26436232 26590875 seconds 107.0 -chr20 26596363 28499358 seconds 158.0 -chr20 28504764 28751119 seconds 1259.0 -chr20 28752590 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seconds 25.6 -chr21 6789085 6934219 seconds 30.4 -chr21 6984219 7149527 seconds 24.4 -chr21 7199527 7327865 seconds 555.0 -chr21 7377865 7500890 seconds 24.5 -chr21 7550890 7693700 seconds 24.9 -chr21 7743700 7865746 seconds 25.6 -chr21 7915746 8049839 seconds 940.0 -chr21 8099839 8260971 seconds 1171.0 -chr21 8310971 8472360 seconds 248.0 -chr21 8522360 8706715 seconds 86.0 -chr21 8756715 8886604 seconds 264.0 -chr21 8986604 9196087 seconds 1117.0 -chr21 9246087 9377143 seconds 387.0 -chr21 9527143 10169868 seconds 682.0 -chr21 10269868 10274327 seconds 1216.0 -chr21 10324327 10814560 seconds 5219.0 -chr21 12965808 43212462 seconds 2798.0 -chr21 43262462 46699983 seconds 349.0 -chr22 10510000 10784643 seconds 1686.0 -chr22 10834643 10874572 seconds 24.7 -chr22 10924572 10966724 seconds 372.0 -chr22 11016724 11068987 seconds 956.0 -chr22 11118987 11160921 seconds 47.2 -chr22 11210921 11378056 seconds 740.0 -chr22 11428056 11497337 seconds 36.1 -chr22 11547337 11631288 seconds 825.0 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10923564 10956868 seconds 41.4 -chrY 10957767 10961625 seconds 25.0 -chrY 10962533 10965694 seconds 26.0 -chrY 10967284 10969992 seconds 25.3 -chrY 10970620 11002276 seconds 47.2 -chrY 11003059 11012528 seconds 25.0 -chrY 11013046 11016992 seconds 41.0 -chrY 11017247 11023374 seconds 26.5 -chrY 11024266 11028342 seconds 25.6 -chrY 11029160 11036252 seconds 25.5 -chrY 11037032 11592902 seconds 4681.0 -chrY 11642902 11647442 seconds 24.9 -chrY 11647709 11660374 seconds 24.6 -chrY 11662181 11673795 seconds 24.1 -chrY 11674123 20207793 seconds 294.0 -chrY 20257793 21739542 seconds 112.0 -chrY 21741441 21747863 seconds 19.6 -chrY 21748371 21750013 seconds 19.7 -chrY 21750314 21789281 seconds 35.5 -chrY 21805281 26673214 seconds 838.0 -chrY 56673214 56771509 seconds 1360.0 -chrY 56821509 56887902 seconds 2474.0 +chr1 10000 207666 seconds 47.3 +chr1 257666 297968 seconds 29.0 +chr1 347968 535988 seconds 23.2 +chr1 585988 2702781 seconds 352.0 +chr1 2746290 12954384 seconds 871.0 +chr1 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