README.md

crispr-nf

DEPRECATED: Use zuberlab/crispr-process-nf

Pre-processing of CRISPR-Cas9 / shRNA screening data

Basic usage

With Singularity >= 2.3.x

nextflow run ZuberLab/crispr-nf

Local execution

nextflow run ZuberLab/crispr-nf -profile local

Documentation

nextflow run ZuberLab/crispr-nf --help

Credits

Nextflow: Paolo Di Tommaso - https://github.com/nextflow-io/nextflow

Singularity: http://singularity.lbl.gov