Skip to content

Commit 2382986

Browse files
Update lib/galaxy/datatypes/binary.py
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
1 parent 755ff19 commit 2382986

1 file changed

Lines changed: 1 addition & 1 deletion

File tree

lib/galaxy/datatypes/binary.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1127,7 +1127,7 @@ def get_cram_version(self, filename: str) -> Tuple[int, int]:
11271127
def set_index_file(self, dataset: HasFileName, index_file) -> bool:
11281128
extra_threads = int(os.environ.get("GALAXY_SLOTS", 1)) - 1
11291129
try:
1130-
pysam.index("-o", index_file.get_file_name(), f"-@{extra_threads}", dataset.get_file_name()) # type: ignore[attr-defined, unused-ignore]
1130+
pysam.index("-o", index_file.get_file_name(), f"-@{extra_threads}", dataset.get_file_name())
11311131
return True
11321132
except Exception as exc:
11331133
log.warning("%s, set_index_file Exception: %s", self, exc)

0 commit comments

Comments
 (0)