Pin rocrate<0.15.0 until roc-validator supports RO-Crate Metadata Specification 1.2

rocrate 0.15.0 produces crates conforming to 1.2 spec by default, which
causes roc-validator validation errors like:

```
The RO-Crate metadata file descriptor MUST have a `conformsTo` property with the RO-Crate specification version
```

xref crs4/rocrate-validator#107

Also:
- Remove unused `BaseWorkflowPopulator.validate_invocation_crate_directory()` method.

Author: nsoranzo

lib/galaxy_test/base/populators.py

@@ -2551,13 +2551,6 @@ def get_ro_crate(self, invocation_id, include_files=False):
         )
         return ROCrate(crate_response)
 
-    def validate_invocation_crate_directory(self, crate_directory):
-        # TODO: where can a ro_crate be extracted
-        metadata_json_path = crate_directory / "ro-crate-metadata.json"
-        with metadata_json_path.open() as f:
-            metadata_json = json.load(f)
-            assert metadata_json["@context"] == "https://w3id.org/ro/crate/1.1/context"
-
     def invoke_workflow_raw(self, workflow_id: str, request: dict, assert_ok: bool = False) -> Response:
         url = f"workflows/{workflow_id}/invocations"
         invocation_response = self._post(url, data=request, json=True)

packages/data/setup.cfg

@@ -59,7 +59,7 @@ install_requires =
     pypng
     python-magic
     pysam>=0.21
-    rocrate
+    rocrate<0.15.0
     social-auth-core>=4.5.0
     SQLAlchemy>=2.0.37,<2.1,!=2.0.41
     tifffile

pyproject.toml

@@ -91,7 +91,7 @@ dependencies = [
     "refgenconf>=0.13.0",  # https://github.com/refgenie/refgenconf/pull/149
     "regex",
     "requests",
-    "rocrate",
+    "rocrate<0.15.0",  # https://github.com/crs4/rocrate-validator/issues/107
     "Routes",
     "s3fs>=2023.1.0",
     "schema-salad>=8.7.20240905150001",  # Python 3.13 support