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Update node serialization/deserialization and other Pydantic issues #6472

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Update node serialization/deserialization and other Pydantic issues

Update node serialization/deserialization and other Pydantic issues #6472

Run time

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Job Run time
install-with-pip
31s
validate-dependency-specification
11s
install-with-conda (3.11, true)
46s
install-with-conda (3.10, true)
57s
install-with-pip ([atomic_tools,docs,notebook,rest,tests,tui])
1m 17s
install-with-conda (3.14, true)
51s
install-with-conda (3.12, true)
49s
install-with-conda (false)
57s
install-with-conda (3.13, true)
50s
create-conda-environment
59s
tests (3.11)
19m 25s
tests (3.12)
21m 40s
tests (3.14)
20m 39s
tests (3.10)
22m 23s
tests (3.13)
20m 12s
1h 52m 27s
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