build(python): upgrade to Snakemake 9.16.3 (reanahub#514)

Upgrade Snakemake to 9.16.3.

Add plugin `snakemake-executor-plugin-kubernetes` to the list of
dependencies. This is now necessary since upstream Snakemake extracted
executors to plugins.

Upgrade `snakemake-storage-plugin-xrootd` plugin to 1.0.0.

Author: alefisico

AUTHORS.md

@@ -5,6 +5,7 @@ The list of contributors in alphabetical order:
 - [Adelina Lintuluoto](https://orcid.org/0000-0002-0726-1452)
 - [Agisilaos Kounelis](https://orcid.org/0000-0001-9312-3189)
 - [Alastair Lyall](https://orcid.org/0009-0000-4955-8935)
+- [Alejandro Gomez Espinosa](https://orcid.org/0000-0002-9443-7769)
 - [Alp Tuna](https://orcid.org/0009-0001-1915-3993)
 - [Audrius Mecionis](https://orcid.org/0000-0002-3759-1663)
 - [Bruno Rosendo](https://orcid.org/0000-0002-0923-3148)

setup.py

@@ -42,10 +42,11 @@
     "snakemake": [
         "snakemake==7.32.4 ; python_version<'3.11'",
         "pulp>=2.7.0,<2.8.0 ; python_version<'3.11'",
-        "snakemake==8.27.1 ; python_version>='3.11'",
+        "snakemake==9.16.3 ; python_version>='3.11'",
+        "snakemake-executor-plugin-kubernetes>=0.1.3 ; python_version>='3.11'",
     ],
     "snakemake-xrootd": [
-        "snakemake-storage-plugin-xrootd==0.1.4 ; python_version>='3.11'",
+        "snakemake-storage-plugin-xrootd==1.0.0 ; python_version>='3.11'",
     ],
 }