eager/conf/testbam.config at 8c238a02d9d437d5632378cc572e6a2e848c0313 · apeltzer/eager · GitHub

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/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 * nextflow run nf-core/eager -profile test, docker (or singularity, or conda)
 */

params {
  max_cpus = 2
  max_memory = 6.GB
  max_time = 48.h
  genome = "Custom"
  //Input data
  readPaths = [
    'https://github.com/nf-core/test-datasets/raw/eager2/testdata/Mammoth/bam/test1.bam',
    'https://github.com/nf-core/test-datasets/raw/eager2/testdata/Mammoth/bam/test2.bam'
  ]
  // Genome references
  fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/eager2/reference/Mammoth_MT_Krause.fasta'
}