eager/conf/multiqc_config.yaml at e3e37db877375c50e03c7654b1d6cc639f4134f4 · apeltzer/eager · GitHub

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report_comment: >
    This report has been generated by the <a href="https://github.com/nf-core/eager" target="_blank">nf-core/eager</a>
    analysis pipeline. For information about how to interpret these results, please see the
    <a href="https://github.com/nf-core/eager" target="_blank">documentation</a>.
report_section_order:
    nf-core/eager-software-versions:
        order: -1000
    fastqc:
        after: 'nf-core/eager-software-versions'
        name: 'FastQC (raw)'
        path_filters:
            - '*_fastqc.zip'
    fastqc:
        name: 'FastQC (trimmed)'
        info: 'This section of the report shows FastQC results after adapter trimming.'
        target: ''
        path_filters:
            - '*combined.prefixed_fastqc.zip'
    adapterRemoval:
        after: 'fastqc'
    Samtools:
        after: 'adapterRemoval'
    dedup:
        after: 'Samtools'
    qualimap:
        after: 'dedup'
    preseq:
        after: 'qualimap'