feat: Make search tool version and limit optional and update dependencies

- Make `version` parameter optional in `SearchToolOptions`, defaulting to "latest".
- Make `limit` parameter optional in `SearchToolOptions`, defaulting to 5.
- Add JSDoc comment to `SearchTool` class.
- Add `server.prompt` for `docs`.
- Add `server.resource` for `libraries` and `versions`.
- Update dependencies (minor/patch versions).

Author: arabold

.clineignore

@@ -0,0 +1,7 @@
+package-lock.json
+node_modules/
+dist/
+.git/
+*.log
+.env.*
+!.env.example