Merge branch 'update-galaxy-packages' into test-updating-packages

Author: arash77

.github/workflows/pr.yaml

@@ -76,6 +76,10 @@ jobs:
     # are not available as wheels, pip will build a wheel for them, which can be cached.
     - name: Install wheel
       run: pip install wheel
+    - name: Update galaxy packages to match tested Galaxy version
+      run: |
+        base="git+https://github.com/${{ env.GALAXY_FORK }}/galaxy.git@${{ env.GALAXY_BRANCH }}#subdirectory=packages"
+        pip install --reinstall "$base/util" "$base/tool_util_models" "$base/tool_util"
     - name: Install flake8
       run: pip install flake8 flake8-import-order
     - uses: actions/checkout@v5
@@ -124,7 +128,10 @@ jobs:
       with:
         path: ~/.cache/pip
         key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
-
+    - name: Update galaxy packages to match tested Galaxy version
+      run: |
+        base="git+https://github.com/${{ env.GALAXY_FORK }}/galaxy.git@${{ env.GALAXY_BRANCH }}#subdirectory=packages"
+        pip install --reinstall "$base/util" "$base/tool_util_models" "$base/tool_util"
     - name: Set skip version check for push event (i.e. merge to main)
       if: ${{ github.event_name != 'pull_request' }}
       run:
@@ -282,6 +289,10 @@ jobs:
       with:
         path: ~/.cache/pip
         key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
+    - name: Update galaxy packages to match tested Galaxy version
+      run: |
+        base="git+https://github.com/${{ env.GALAXY_FORK }}/galaxy.git@${{ env.GALAXY_BRANCH }}#subdirectory=packages"
+        pip install --reinstall "$base/util" "$base/tool_util_models" "$base/tool_util"
     - name: Cache .planemo
       uses: actions/cache@v4
       id: cache-planemo
@@ -337,6 +348,10 @@ jobs:
       with:
         path: ~/.cache/pip
         key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
+    - name: Update galaxy packages to match tested Galaxy version
+      run: |
+        base="git+https://github.com/${{ env.GALAXY_FORK }}/galaxy.git@${{ env.GALAXY_BRANCH }}#subdirectory=packages"
+        pip install --reinstall "$base/util" "$base/tool_util_models" "$base/tool_util"
     - name: Combine outputs
       uses: galaxyproject/planemo-ci-action@v1
       id: combine
@@ -384,6 +399,10 @@ jobs:
       with:
         path: ~/.cache/pip
         key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
+    - name: Update galaxy packages to match tested Galaxy version
+      run: |
+        base="git+https://github.com/${{ env.GALAXY_FORK }}/galaxy.git@${{ env.GALAXY_BRANCH }}#subdirectory=packages"
+        pip install --reinstall "$base/util" "$base/tool_util_models" "$base/tool_util"
     - name: Deploy on testtoolshed
       uses: galaxyproject/planemo-ci-action@v1
       with: