chore(deps): bump versions (#792)

## Summary
- replicate the currently open Dependabot dependency updates in a single
branch
- update `smol-toml` to `^1.6.0`
- update `@biomejs/biome` to `2.3.8`
- regenerate `package-lock.json` and bundled `dist` output

## Notes
- `main` already includes the open Octokit Dependabot bumps, so those
PRs required no additional net changes here
- the open `smol-toml` Dependabot PR currently resolves to `^1.6.0`,
which is what this branch mirrors

## Validation
- `npm run all`

Author: eifinger