Merge pull request #300 from bigbio/automation/sync-sdrf-templates-main #692
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| name: Conda Build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for setuptools-scm | |
| - name: Set version for setuptools-scm | |
| run: | | |
| # Get current branch name | |
| BRANCH_NAME="${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}" | |
| # Try to get version from git tags | |
| if git describe --tags --exact-match 2>/dev/null; then | |
| # On a tag - use the tag version | |
| VERSION=$(git describe --tags --exact-match | sed 's/^v//') | |
| else | |
| # Not on a tag - create dev version with branch name | |
| COMMIT_SHORT=$(git rev-parse --short HEAD) | |
| # Replace slashes with underscores for branch name (setuptools-scm format) | |
| BRANCH_SAFE=$(echo "$BRANCH_NAME" | sed 's/\//_/g') | |
| VERSION="0.0.0+${BRANCH_SAFE}.${COMMIT_SHORT}" | |
| fi | |
| echo "SETUPTOOLS_SCM_PRETEND_VERSION=$VERSION" >> $GITHUB_ENV | |
| echo "Building version: $VERSION (branch: $BRANCH_NAME)" | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: sdrf-pipelines-build | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| python-version: '3.13' | |
| channels: bioconda,conda-forge,defaults | |
| - name: Install build dependencies | |
| run: | | |
| conda install -n sdrf-pipelines-build conda-build conda-verify anaconda-client | |
| - name: Verify conda recipe | |
| run: | | |
| conda-verify . | |
| - name: Build and test the sdrf-pipelines package | |
| run: | | |
| # conda build automatically runs the tests defined in meta.yaml test section | |
| conda build --package-format .tar.bz2 recipe | |
| env: | |
| SETUPTOOLS_SCM_PRETEND_VERSION: ${{ env.SETUPTOOLS_SCM_PRETEND_VERSION }} |