BICAN McCarroll workflow templates

Author: alecw

.github/CODEOWNERS

@@ -9,3 +9,9 @@
 # of maintenance through personnel turnover.
 /.github/workflow-templates/bits-example.yml             @broadinstitute/devnull
 /.github/workflow-templates/bits-example.properties.json @broadinstitute/devnull
+/.github/workflow-templates/bican-mccarroll-r-package.yml @broadinstitute/bican-mccarroll-admin
+/.github/workflow-templates/bican-mccarroll-r-package.properties.json @broadinstitute/bican-mccarroll-admin
+/.github/workflow-templates/bican-mccarroll-python-package.yml @broadinstitute/bican-mccarroll-admin
+/.github/workflow-templates/bican-mccarroll-python-package.properties.json @broadinstitute/bican-mccarroll-admin
+/.github/workflow-templates/bican-mccarroll-roxygen.yml @broadinstitute/bican-mccarroll-admin
+/.github/workflow-templates/bican-mccarroll-roxygen.properties.json @broadinstitute/bican-mccarroll-admin

.github/workflow-templates/bican-mccarroll-python-package.properties.json

@@ -0,0 +1,8 @@
+{
+    "name": "BICAN McCarroll python package Workflow",
+    "description": "Invoke the BICAN McCarroll reusable python package CI workflow.",
+    "categories": [
+        "Python",
+        "continuous-integration"
+    ]
+}

.github/workflow-templates/bican-mccarroll-python-package.yml

@@ -0,0 +1,19 @@
+---
+name: "Python unit tests for a package"
+"on":
+  push:
+    branches:
+      - "$default-branch"
+  pull_request:
+    branches:
+      - "$default-branch"
+    paths:
+      - "python/bican_mccarroll_<package_name>/**"
+
+
+jobs:
+  call-python-reusable:
+    uses: "./.github/workflows/python-reusable.yml"
+    with:
+      package_name: "<package_name>"
+    secrets: "inherit"

.github/workflow-templates/bican-mccarroll-r-package.properties.json

@@ -0,0 +1,8 @@
+{
+    "name": "BICAN McCarroll R package Workflow",
+    "description": "Invoke the BICAN McCarroll reusable R package CI workflow.",
+    "categories": [
+        "R",
+        "continuous-integration"
+    ]
+}

.github/workflow-templates/bican-mccarroll-r-package.yml

@@ -0,0 +1,23 @@
+---
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures?
+# Start at https://github.com/r-lib/actions#where-to-find-help
+"on":
+  push:
+    branches:
+      - "$default-branch"
+  pull_request:
+    branches:
+      - "$default-branch"
+    paths:
+      - "R/bican.mccarroll.<package_name>/**"
+
+name: "Build and check R package"
+
+
+jobs:
+  call-R-reusable:
+    uses: "./.github/workflows/R-reusable.yml"
+    with:
+      package_name: "<package_name>"
+    secrets: "inherit"

.github/workflow-templates/bican-mccarroll-roxygen.properties.json

@@ -0,0 +1,8 @@
+{
+    "name": "BICAN McCarroll Roxygen package Workflow",
+    "description": "Invoke the BICAN McCarroll reusable R package documentation generation workflow.",
+    "categories": [
+        "R",
+        "continuous-integration"
+    ]
+}

.github/workflow-templates/bican-mccarroll-roxygen.yml

@@ -0,0 +1,23 @@
+---
+# Workflow derived from dplyr/.github/workflows/pr-commands.yaml
+# Need help debugging build failures?
+# Start at https://github.com/r-lib/actions#where-to-find-help
+"on":
+  issue_comment:
+    types:
+      - "created"
+    paths:
+      - "R/bican.mccarroll.<package_name>/**"
+
+name: >
+  Run roxygen2 on an R package and commit changes.
+  Triggered by a PR comment '/document.<package_name>'
+
+permissions: "write-all"
+
+jobs:
+  call-roxygen-reusable:
+    uses: "./.github/workflows/roxygen-reusable.yml"
+    with:
+      package_name: "<package_name>"
+    secrets: "inherit"