Build and Test

Fix remaining unqualified module references and missing imports in tests #26

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Run time

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Job	Run time
paths-filter	4s
get-version	6s
build-baseimage	34s
build-core	7m 46s
build-phylo	9m 54s
build-classify	12m 47s
build-assemble	11m 44s
test-core	1m 29s
build-mega	16m 36s
test-phylo	1m 37s
test-assemble	1m 53s
test-classify	1m 47s
deploy-to-quay	0s
	1h 6m 17s

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