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Add explicit permissions to workflow jobs (CodeQL fixes) Build and Test #18: Commit 0261125 pushed by dpark01
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Push on main CodeQL #67: by dpark01
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Refactor commonly-used classes to importable modules (issue #1018) Build and Test #17: Commit 7282f2a pushed by dpark01
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Push on main CodeQL #66: by dpark01
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Redesign CI: Docker-based testing with paths-filter Build and Test #16: Commit ac13f1a pushed by dpark01
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Push on main CodeQL #65: by dpark01
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Phase 3c: Migrate viral-classify to monorepo Build and Test #15: Commit 4cb13d2 pushed by dpark01
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Push on main CodeQL #64: by dpark01
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Phase 3b: Update viral-phylo imports and add Docker infrastructure Build and Test #14: Commit a74b07c pushed by dpark01
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Push on main CodeQL #63: by dpark01
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Add CLI version verification to Dockerfile.core Build and Test #13: Commit fc598ca pushed by dpark01
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Push on main CodeQL #62: by dpark01
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Fix Dockerfile.assemble import paths for moved modules Build and Test #12: Commit 5dc694a pushed by dpark01
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Push on main CodeQL #61: by dpark01
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Fix git describe to produce PEP 440 compliant versions Build and Test #11: Commit 84f695c pushed by dpark01
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Push on main CodeQL #60: by dpark01
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Reorganize command modules and improve Docker versioning Build and Test #10: Commit 8d5fc36 pushed by dpark01
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Push on main CodeQL #59: by dpark01
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docs: Update planning docs with Phase 3a learnings and completion Build and Test #9: Commit a99a538 pushed by dpark01
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Push on main CodeQL #58: by dpark01
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Phase 3a: Migrate viral-assemble with history preservation Build and Test #8: Commit 6c58c61 pushed by dpark01
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Push on main CodeQL #57: by dpark01
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Add baseimage dependencies and enhance Docker images Build and Test #7: Commit dabeee8 pushed by dpark01
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Push on main CodeQL #56: by dpark01
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Clean up legacy files imported from viral-core Build and Test #6: Commit eb8576d pushed by dpark01
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