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dpark01claude
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Revert fastqc and trimmomatic pins to main values — not needed for CVE fixes
Neither fastqc nor trimmomatic ever used log4j, so the version bumps were unnecessary for security. Reverting to reduce solver constraints on ARM64 where icu version conflicts are causing build failures. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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docker/requirements/core.txt

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,7 @@ bcftools>=1.10
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bedtools>=2.29.2
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bwa>=0.7.17
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cd-hit>=4.6.8
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fastqc>=0.12.1
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fastqc>=0.11.7
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fgbio>=2.2.1
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gatk=3.8
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illumina-interop=1.5.0
@@ -46,4 +46,4 @@ prinseq>=0.20.4
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sambamba>=1.0.1
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samtools>=1.21
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splitcode>=0.31.4
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trimmomatic>=0.40
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trimmomatic>=0.38

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