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dpark01claude
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Pin snpeff=5.2 exact — 5.3+/5.4+ require openjdk>=21 which conflicts on ARM64
snpeff 5.3+ needs Java 21+, which pulls in harfbuzz/icu versions that conflict with fgbio's r-base, vphaser2's boost-cpp, and csvkit's pyicu on ARM64. snpeff 5.2 already includes the Log4Shell fix (log4j 2.17.1). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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docker/requirements/phylo.txt

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@@ -4,5 +4,5 @@ lofreq>=2.1.5
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mafft>=7.508
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mummer4>=4.0.0rc1
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muscle=3.8.1551
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snpeff>=5.2
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snpeff=5.2
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vphaser2>=2.0

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