Skip to content

[feature] Update built-in ARTIC protocols #289

[feature] Update built-in ARTIC protocols

[feature] Update built-in ARTIC protocols #289

Triggered via push November 18, 2025 13:39
Status Success
Total duration 19m 16s
Artifacts 4

tutorials.yaml

on: push
Matrix: tutorial
Fit to window
Zoom out
Zoom in

Annotations

21 warnings
installer
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
installer
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment: - lib/libuuid.a - lib/libuuid.so - lib/pkgconfig/uuid.pc
installer
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
installer
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
installer
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
installer
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
installer
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
tutorial (sarscov2)
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
tutorial (sarscov2)
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment: - lib/libuuid.a - lib/libuuid.so - lib/pkgconfig/uuid.pc
tutorial (sarscov2)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
tutorial (sarscov2)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tutorial (sarscov2)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
tutorial (sarscov2)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tutorial (sarscov2)
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
tutorial (hiv)
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
tutorial (hiv)
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment: - lib/libuuid.a - lib/libuuid.so - lib/pkgconfig/uuid.pc
tutorial (hiv)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
tutorial (hiv)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tutorial (hiv)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
tutorial (hiv)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tutorial (hiv)
Unexpected input(s) 'no-implicit-channels', valid inputs are ['installer-url', 'installation-dir', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'conda-remove-defaults', 'show-channel-urls', 'pkgs-dirs', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']

Artifacts

Produced during runtime
Name Size Digest
JupyterNotebooks-Install Expired
27 KB
sha256:afe2ae22e3a5002e474c3ceecefe9a1b576e9ae0b4a65b4d0b72fd8cf10ccf9d
JupyterNotebooks-hiv Expired
38.7 KB
sha256:673435e1f05de39b5de7b75b0e5b77943b59d1f00f8b1d1b27133b7834d41977
JupyterNotebooks-sarscov2 Expired
139 KB
sha256:a870a69a6687c3b71023669981dc159f4f9837c66ee4cf1efa8034e20b955d22
VPipeInstallation Expired
296 MB
sha256:47a1135e0124aca4be8eaa1928a277a7c78c777a2eaf7fe4bc3ab2b7ba7b5916