meta.yaml

package:
  name: spectacle
  version: 1.4

source:
  git_url: https://github.com/jiminsong/Spectacle.git
  git_rev: v1.4
# patches:
#    - shebang.patch

build:
  detect_binary_files_with_prefix: True
  number: 0
  skip: True # [osx]

requirements:
  run:
    - java-jdk
    - scipy
    - numpy

about:
  home: https://github.com/jiminsong/Spectacle
  license: GPLv3
  summary: 'This software implements a spectral learning algorithm for hidden Markov models for epigenomic data. Please see our paper for further details: Song, J and Chen, K. C. Spectacle: fast chromatin state annotation using spectral learning. Genome Biology, 16:33, 2015. http://genomebiology.com/2015/16/1/33'

extra:
  notes: 'The Spectacle github repo weighs in at around 500MB, a large portion of which is data files. These have been removed from the conda recipe, but a script (download_spectacle_data.sh) has been included here which will download those files from github.  In addition, a wrapper script `Spectacle.sh` has been included in this recipe and should be used when calling the program.'