lint, style, and tests

Upgrade zarr-python dependency to 3.0 #632

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Run time

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Job	Run time
Lint Check (3.11)	10s
Style Check (3.11)	7s
isort Check (3.11)	4s
docs	1m 8s
tests (3.11)	3m 4s
tests (3.12)	3m 20s
tests (3.13)	3m 20s
	11m 13s

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