lint, style, and tests

Upgrade zarr-python dependency to 3.0 #633

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Run time

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Job	Run time
isort Check (3.11)	5s
Lint Check (3.11)	9s
Style Check (3.11)	6s
docs	1m 8s
tests (3.11)	4m 48s
tests (3.12)	5m 4s
tests (3.13)	5m 5s
	16m 25s

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