lint, style, and tests

Upgrade zarr-python dependency to 3.0 #637

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Run time

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Job	Run time
isort Check (3.11)	6s
Style Check (3.11)	12s
Lint Check (3.11)	7s
docs	1m 12s
tests (3.11)	5m 37s
tests (3.12)	7m 23s
tests (3.13)	7m 14s
	21m 51s

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