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Deployed d674602 to dev with Zensical 0.0.31 and mike 2.2.0+zensical-0.1.0
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dev/cli/index.html

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<ul class="md-nav__list">
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<h3 id="convert">convert<a class="headerlink" href="#convert" title="Permanent link">&para;</a></h3>
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<h3 id="iohub-convert">iohub convert<a class="headerlink" href="#iohub-convert" title="Permanent link">&para;</a></h3>
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<p>Converts Micro-Manager TIFF datasets to OME-Zarr</p>
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<p><strong>Usage:</strong></p>
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<div class="language-text highlight"><pre><span></span><code><span id="__span-1-1"><a id="__codelineno-1-1" name="__codelineno-1-1" href="#__codelineno-1-1"></a>iohub convert [OPTIONS]
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<h3 id="iohub-info">iohub info<a class="headerlink" href="#iohub-info" title="Permanent link">&para;</a></h3>
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<p>View basic metadata of a list of FILES.</p>
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<p>Supported formats are Micro-Manager-acquired TIFF datasets
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(single-page TIFF, multi-page OME-TIFF, NDTIFF)
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<h3 id="iohub-rename-wells">iohub rename-wells<a class="headerlink" href="#iohub-rename-wells" title="Permanent link">&para;</a></h3>
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<p>Rename wells in an plate.</p>
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<div class="language-text highlight"><pre><span></span><code><span id="__span-3-1"><a id="__codelineno-3-1" name="__codelineno-3-1" href="#__codelineno-3-1"></a>iohub rename-wells -i plate.zarr -c names.csv
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<h3 id="iohub-set-scale">iohub set-scale<a class="headerlink" href="#iohub-set-scale" title="Permanent link">&para;</a></h3>
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<p>Update scale metadata in OME-Zarr datasets.</p>
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<div class="language-text highlight"><pre><span></span><code><span id="__span-6-1"><a id="__codelineno-6-1" name="__codelineno-6-1" href="#__codelineno-6-1"></a>iohub set-scale -i input.zarr/*/*/* -t 1.0 -z 1.0 -y 0.5 -x 0.5
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