AIRS/OpenMol/Geo2Seq/environment.yml at main · divelab/AIRS · GitHub

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name: geoseq
channels:
  - defaults
dependencies:
  - defaults/linux-64::_libgcc_mutex==0.1=main
  - defaults/linux-64::blas==1.0=mkl
  - defaults/linux-64::ca-certificates==2023.08.22=h06a4308_0
  - nvidia/linux-64::cuda-cudart==11.8.89=0
  - nvidia/linux-64::cuda-cupti==11.8.87=0
  - nvidia/linux-64::cuda-nvrtc==11.8.89=0
  - nvidia/linux-64::cuda-nvtx==11.8.86=0
  - defaults/linux-64::ld_impl_linux-64==2.38=h1181459_1
  - nvidia/linux-64::libcublas==11.11.3.6=0
  - nvidia/linux-64::libcufft==10.9.0.58=0
  - nvidia/linux-64::libcufile==1.8.0.34=0
  - nvidia/linux-64::libcurand==10.3.4.52=0
  - nvidia/linux-64::libcusolver==11.4.1.48=0
  - nvidia/linux-64::libcusparse==11.7.5.86=0
  - nvidia/linux-64::libnpp==11.8.0.86=0
  - nvidia/linux-64::libnvjpeg==11.9.0.86=0
  - defaults/linux-64::libstdcxx-ng==11.2.0=h1234567_1
  - pytorch/noarch::pytorch-mutex==1.0=cuda
  - nvidia/linux-64::cuda-libraries==11.8.0=0
  - defaults/linux-64::libgomp==11.2.0=h1234567_1
  - defaults/linux-64::_openmp_mutex==5.1=1_gnu
  - nvidia/linux-64::cuda-runtime==11.8.0=0
  - defaults/linux-64::libgcc-ng==11.2.0=h1234567_1
  - pytorch/linux-64::pytorch-cuda==11.8=h7e8668a_5
  - defaults/linux-64::bzip2==1.0.8=h7b6447c_0
  - defaults/linux-64::giflib==5.2.1=h5eee18b_3
  - defaults/linux-64::gmp==6.2.1=h295c915_3
  - defaults/linux-64::icu==73.1=h6a678d5_0
  - defaults/linux-64::jpeg==9e=h5eee18b_1
  - defaults/linux-64::lame==3.100=h7b6447c_0
  - defaults/linux-64::lerc==3.0=h295c915_0
  - defaults/linux-64::libdeflate==1.17=h5eee18b_1
  - defaults/linux-64::libffi==3.4.4=h6a678d5_0
  - defaults/linux-64::libiconv==1.16=h7f8727e_2
  - pytorch/linux-64::libjpeg-turbo==2.0.0=h9bf148f_0
  - defaults/linux-64::libsodium==1.0.18=h7b6447c_0
  - defaults/linux-64::libtasn1==4.19.0=h5eee18b_0
  - defaults/linux-64::libunistring==0.9.10=h27cfd23_0
  - defaults/linux-64::libwebp-base==1.3.2=h5eee18b_0
  - defaults/linux-64::lz4-c==1.9.4=h6a678d5_0
  - defaults/linux-64::ncurses==6.4=h6a678d5_0
  - defaults/linux-64::openh264==2.1.1=h4ff587b_0
  - defaults/linux-64::openssl==3.0.11=h7f8727e_2
  - defaults/linux-64::tbb==2021.8.0=hdb19cb5_0
  - defaults/linux-64::xz==5.4.2=h5eee18b_0
  - defaults/linux-64::yaml==0.2.5=h7b6447c_0
  - defaults/linux-64::zlib==1.2.13=h5eee18b_0
  - defaults/linux-64::intel-openmp==2023.1.0=hdb19cb5_46305
  - defaults/linux-64::libidn2==2.3.4=h5eee18b_0
  - defaults/linux-64::libpng==1.6.39=h5eee18b_0
  - defaults/linux-64::libxml2==2.10.4=hf1b16e4_1
  - defaults/linux-64::llvm-openmp==14.0.6=h9e868ea_0
  - defaults/linux-64::mpfr==4.0.2=hb69a4c5_1
  - defaults/linux-64::nettle==3.7.3=hbbd107a_1
  - defaults/linux-64::readline==8.2=h5eee18b_0
  - defaults/linux-64::tk==8.6.12=h1ccaba5_0
  - defaults/linux-64::zeromq==4.3.4=h2531618_0
  - defaults/linux-64::zstd==1.5.5=hc292b87_0
  - defaults/linux-64::freetype==2.12.1=h4a9f257_0
  - defaults/linux-64::gnutls==3.6.15=he1e5248_0
  - defaults/linux-64::libtiff==4.5.1=h6a678d5_0
  - defaults/linux-64::libxslt==1.1.37=h5eee18b_1
  - defaults/linux-64::mkl==2023.1.0=h213fc3f_46343
  - defaults/linux-64::mpc==1.1.0=h10f8cd9_1
  - defaults/linux-64::sqlite==3.41.2=h5eee18b_0
  - pytorch/linux-64::ffmpeg==4.3=hf484d3e_0
  - defaults/linux-64::lcms2==2.12=h3be6417_0
  - defaults/linux-64::libwebp==1.3.2=h11a3e52_0
  - defaults/linux-64::openjpeg==2.4.0=h3ad879b_0
  - defaults/linux-64::python==3.8.18=h955ad1f_0
  - defaults/linux-64::absl-py==1.4.0=py38h06a4308_0
  - defaults/linux-64::aiofiles==22.1.0=py38h06a4308_0
  - defaults/linux-64::aiosqlite==0.18.0=py38h06a4308_0
  - defaults/linux-64::attrs==23.1.0=py38h06a4308_0
  - defaults/noarch::backcall==0.2.0=pyhd3eb1b0_0
  - defaults/linux-64::certifi==2023.7.22=py38h06a4308_0
  - defaults/noarch::charset-normalizer==2.0.4=pyhd3eb1b0_0
  - defaults/linux-64::debugpy==1.6.7=py38h6a678d5_0
  - defaults/noarch::decorator==5.1.1=pyhd3eb1b0_0
  - defaults/noarch::defusedxml==0.7.1=pyhd3eb1b0_0
  - defaults/linux-64::entrypoints==0.4=py38h06a4308_0
  - defaults/noarch::executing==0.8.3=pyhd3eb1b0_0
  - defaults/linux-64::filelock==3.9.0=py38h06a4308_0
  - defaults/linux-64::gmpy2==2.1.2=py38heeb90bb_0
  - defaults/linux-64::idna==3.4=py38h06a4308_0
  - defaults/noarch::ipython_genutils==0.2.0=pyhd3eb1b0_1
  - defaults/noarch::json5==0.9.6=pyhd3eb1b0_0
  - defaults/linux-64::lxml==4.9.3=py38hdbbb534_0
  - defaults/linux-64::markupsafe==2.1.1=py38h7f8727e_0
  - defaults/linux-64::mistune==0.8.4=py38h7b6447c_1000
  - defaults/linux-64::mkl-service==2.4.0=py38h5eee18b_1
  - defaults/linux-64::mpmath==1.3.0=py38h06a4308_0
  - defaults/linux-64::nest-asyncio==1.5.6=py38h06a4308_0
  - defaults/linux-64::networkx==3.1=py38h06a4308_0
  - defaults/linux-64::packaging==23.1=py38h06a4308_0
  - defaults/noarch::pandocfilters==1.5.0=pyhd3eb1b0_0
  - defaults/noarch::parso==0.8.3=pyhd3eb1b0_0
  - defaults/noarch::pickleshare==0.7.5=pyhd3eb1b0_1003
  - defaults/linux-64::pillow==10.0.1=py38ha6cbd5a_0
  - defaults/linux-64::pkgutil-resolve-name==1.3.10=py38h06a4308_0
  - defaults/linux-64::platformdirs==3.10.0=py38h06a4308_0
  - defaults/linux-64::prometheus_client==0.14.1=py38h06a4308_0
  - defaults/linux-64::psutil==5.9.0=py38h5eee18b_0
  - defaults/noarch::ptyprocess==0.7.0=pyhd3eb1b0_2
  - defaults/noarch::pure_eval==0.2.2=pyhd3eb1b0_0
  - defaults/noarch::pycparser==2.21=pyhd3eb1b0_0
  - defaults/linux-64::pygments==2.15.1=py38h06a4308_1
  - defaults/linux-64::pyrsistent==0.18.0=py38heee7806_0
  - defaults/linux-64::pysocks==1.7.1=py38h06a4308_0
  - defaults/linux-64::python-fastjsonschema==2.16.2=py38h06a4308_0
  - defaults/linux-64::python-json-logger==2.0.7=py38h06a4308_0
  - defaults/linux-64::pytz==2023.3.post1=py38h06a4308_0
  - defaults/linux-64::pyyaml==6.0.1=py38h5eee18b_0
  - defaults/linux-64::pyzmq==23.2.0=py38h6a678d5_0
  - defaults/linux-64::rfc3986-validator==0.1.1=py38h06a4308_0
  - defaults/noarch::send2trash==1.8.0=pyhd3eb1b0_1
  - defaults/linux-64::setuptools==68.0.0=py38h06a4308_0
  - defaults/noarch::six==1.16.0=pyhd3eb1b0_1
  - defaults/linux-64::sniffio==1.2.0=py38h06a4308_1
  - defaults/linux-64::soupsieve==2.5=py38h06a4308_0
  - defaults/linux-64::tomli==2.0.1=py38h06a4308_0
  - defaults/linux-64::tornado==6.3.3=py38h5eee18b_0
  - defaults/linux-64::traitlets==5.7.1=py38h06a4308_0
  - defaults/linux-64::typing_extensions==4.7.1=py38h06a4308_0
  - defaults/noarch::wcwidth==0.2.5=pyhd3eb1b0_0
  - defaults/linux-64::webencodings==0.5.1=py38_1
  - defaults/linux-64::wheel==0.41.2=py38h06a4308_0
  - defaults/linux-64::y-py==0.5.9=py38h52d8a92_0
  - defaults/linux-64::zipp==3.11.0=py38h06a4308_0
  - defaults/linux-64::anyio==3.5.0=py38h06a4308_0
  - defaults/noarch::asttokens==2.0.5=pyhd3eb1b0_0
  - defaults/linux-64::babel==2.11.0=py38h06a4308_0
  - defaults/linux-64::beautifulsoup4==4.12.2=py38h06a4308_0
  - defaults/noarch::bleach==4.1.0=pyhd3eb1b0_0
  - defaults/linux-64::cffi==1.15.1=py38h5eee18b_3
  - defaults/linux-64::comm==0.1.2=py38h06a4308_0
  - defaults/linux-64::importlib-metadata==6.0.0=py38h06a4308_0
  - defaults/noarch::importlib_resources==5.2.0=pyhd3eb1b0_1
  - defaults/linux-64::jedi==0.18.1=py38h06a4308_1
  - defaults/linux-64::jinja2==3.1.2=py38h06a4308_0
  - defaults/linux-64::jupyter_core==5.3.0=py38h06a4308_0
  - defaults/noarch::jupyterlab_pygments==0.1.2=py_0
  - defaults/linux-64::matplotlib-inline==0.1.6=py38h06a4308_0
  - defaults/linux-64::numpy-base==1.24.3=py38h060ed82_1
  - defaults/noarch::pexpect==4.8.0=pyhd3eb1b0_3
  - defaults/linux-64::pip==23.3=py38h06a4308_0
  - defaults/linux-64::prompt-toolkit==3.0.36=py38h06a4308_0
  - defaults/noarch::python-dateutil==2.8.2=pyhd3eb1b0_0
  - defaults/linux-64::rfc3339-validator==0.1.4=py38h06a4308_0
  - defaults/linux-64::sympy==1.11.1=py38h06a4308_0
  - defaults/linux-64::terminado==0.17.1=py38h06a4308_0
  - defaults/linux-64::tinycss2==1.2.1=py38h06a4308_0
  - defaults/linux-64::typing-extensions==4.7.1=py38h06a4308_0
  - defaults/linux-64::websocket-client==0.58.0=py38h06a4308_4
  - defaults/linux-64::ypy-websocket==0.8.2=py38h06a4308_0
  - defaults/linux-64::argon2-cffi-bindings==21.2.0=py38h7f8727e_0
  - defaults/linux-64::brotlipy==0.7.0=py38h27cfd23_1003
  - defaults/linux-64::cryptography==41.0.3=py38hdda0065_0
  - defaults/noarch::importlib_metadata==6.0.0=hd3eb1b0_0
  - defaults/linux-64::jsonschema==4.17.3=py38h06a4308_0
  - defaults/linux-64::jupyter_client==7.4.9=py38h06a4308_0
  - defaults/noarch::stack_data==0.2.0=pyhd3eb1b0_0
  - defaults/noarch::argon2-cffi==21.3.0=pyhd3eb1b0_0
  - defaults/linux-64::ipython==8.12.2=py38h06a4308_0
  - defaults/linux-64::jupyter_events==0.6.3=py38h06a4308_0
  - defaults/linux-64::jupyter_ydoc==0.2.4=py38h06a4308_0
  - defaults/linux-64::nbformat==5.9.2=py38h06a4308_0
  - defaults/linux-64::pyopenssl==23.2.0=py38h06a4308_0
  - defaults/linux-64::ipykernel==6.25.0=py38h2f386ee_0
  - defaults/linux-64::nbclient==0.5.13=py38h06a4308_0
  - defaults/linux-64::urllib3==1.26.16=py38h06a4308_0
  - defaults/linux-64::nbconvert==6.5.4=py38h06a4308_0
  - defaults/linux-64::requests==2.31.0=py38h06a4308_0
  - defaults/linux-64::jupyter_server==1.23.4=py38h06a4308_0
  - defaults/linux-64::jupyter_server_fileid==0.9.0=py38h06a4308_0
  - defaults/linux-64::jupyterlab_server==2.22.0=py38h06a4308_0
  - defaults/linux-64::notebook-shim==0.2.2=py38h06a4308_0
  - defaults/linux-64::jupyter_server_ydoc==0.8.0=py38h06a4308_1
  - defaults/linux-64::nbclassic==0.5.5=py38h06a4308_0
  - defaults/linux-64::notebook==6.5.4=py38h06a4308_1
  - defaults/linux-64::jupyterlab==3.6.3=py38h06a4308_0
  - defaults/linux-64::mkl_fft==1.3.8=py38h5eee18b_0
  - defaults/linux-64::mkl_random==1.2.4=py38hdb19cb5_0
  - defaults/linux-64::numpy==1.24.3=py38hf6e8229_1
  - pytorch/linux-64::pytorch==2.1.0=py3.8_cuda11.8_cudnn8.7.0_0
  - pytorch/linux-64::torchaudio==2.1.0=py38_cu118
  - pytorch/linux-64::torchtriton==2.1.0=py38
  - pytorch/linux-64::torchvision==0.16.0=py38_cu118
prefix: /data/xinerli/anaconda3/envs/geoseq