dyngen/DESCRIPTION at master · dynverse/dyngen · GitHub

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Type: Package
Package: dyngen
Title: A Multi-Modal Simulator for Spearheading Single-Cell
    Omics Analyses
Version: 1.1.1
Authors@R:
    c(person(given = "Robrecht",
             family = "Cannoodt",
             role = c("aut", "cre", "cph"),
             email = "rcannood@gmail.com",
             comment = c(ORCID = "0000-0003-3641-729X")),
      person(given = "Wouter",
             family = "Saelens",
             role = "aut",
             email = "wouter.saelens@gmail.com",
             comment = c(ORCID = "0000-0002-7114-6248")))
Description: A novel, multi-modal simulation engine for
    studying dynamic cellular processes at single-cell resolution. 'dyngen'
    is more flexible than current single-cell simulation engines. It
    allows better method development and benchmarking, thereby stimulating
    development and testing of novel computational methods. Cannoodt et
    al. (2021) <doi:10.1038/s41467-021-24152-2>.
License: MIT + file LICENSE
URL: https://dyngen.dynverse.org, https://github.com/dynverse/dyngen
BugReports: https://github.com/dynverse/dyngen/issues
Depends:
    R (>= 4.1.0)
Imports:
    assertthat,
    dplyr (>= 1.1.0),
    dynutils (>= 1.0.10),
    ggplot2,
    ggraph (>= 2.0),
    GillespieSSA2 (>= 0.2.6),
    grDevices,
    grid,
    igraph (>= 1.3.0),
    lmds,
    Matrix,
    methods,
    patchwork,
    pbapply,
    purrr,
    rlang (>= 0.4.1),
    stats,
    tibble,
    tidygraph,
    tidyr,
    tidyselect,
    utils,
    viridis
Suggests:
    anndataR,
    ggrepel,
    covr,
    dynwrap (>= 1.2.0),
    R.rsp,
    rmarkdown,
    Seurat,
    SingleCellExperiment (>= 1.5.3),
    SummarizedExperiment,
    testthat
VignetteBuilder:
    R.rsp
biocViews:
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/Needs/website: dynverse/dyno, bioc::countsimQC, tidyverse