ti_pcreode/definition.yml at master · dynverse/ti_pcreode · GitHub

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method:
  id: pcreode
  name: pCreode
  source: tool
  platform: Python
  url: https://github.com/KenLauLab/pCreode
  license: GPL-2
  authors:
  - given: Charles A.
    family: Herring
    email: charles.a.herring@vanderbilt.edu
    github: herrinca
  - given: Ken S.
    family: Lau
    email: ken.s.lau@vanderbilt.edu
    github: KenLauLab

manuscript:
  doi: 10.1016/j.cels.2017.10.012
  google_scholar_cluster_id: '1665065308896440028'
  publication_date: '2017-11-15'

container:
  url: https://github.com/dynverse/ti_pcreode
  docker: dynverse/ti_pcreode

wrapper:
  type: dimred_projection
  topology_inference: free
  trajectory_types:
  - linear
  - bifurcation
  - convergence
  - multifurcation
  - binary_tree
  - tree
  input_required: expression

parameters:
  - id: n_pca_components
    type: integer
    default: 3
    distribution:
      type: uniform
      lower: 2
      upper: 10
  - id: num_runs
    type: integer
    default: 10
    distribution:
      type: expuniform
      lower: 10
      upper: 100