easybuild-easyconfigs/easybuild/easyconfigs/s/scikit-bio/scikit-bio-0.6.2-foss-2023b.eb at develop · easybuilders/easybuild-easyconfigs · GitHub

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easyblock = 'PythonBundle'

name = 'scikit-bio'
version = '0.6.2'

homepage = 'http://scikit-bio.org'
description = """scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms
and educational resources for bioinformatics."""

toolchain = {'name': 'foss', 'version': '2023b'}

dependencies = [
    ('Python', '3.11.5'),
    ('Python-bundle-PyPI', '2023.10'),
    ('SciPy-bundle', '2023.11'),
    ('matplotlib', '3.8.2'),
    ('scikit-learn', '1.4.0'),
    ('IPython', '8.17.2'),
    ('h5py', '3.11.0'),
    ('biom-format', '2.1.16'),
    ('statsmodels', '0.14.1'),
]

exts_list = [
    ('hdmedians', '0.14.2', {
        'checksums': ['b47aecb16771e1ba0736557255d80ae0240b09156bff434321de559b359ac2d6'],
    }),
    ('natsort', '8.4.0', {
        'checksums': ['45312c4a0e5507593da193dedd04abb1469253b601ecaf63445ad80f0a1ea581'],
    }),
    (name, version, {
        'modulename': 'skbio',
        'patches': ['fix-cython-segmentation-error_scikit-bio-0.6.2.patch'],
        'checksums': [
            {'scikit-bio-0.6.2.tar.gz': 'af217ad12243cdaeef74a8f3bebe0d04aefda2a22d963d634201a36318b1a404'},
            {'fix-cython-segmentation-error_scikit-bio-0.6.2.patch':
             'd5e7f2266eb2f19905c5ff4b56e691c42ea0372c8c85a08791074ecf28aced51'},
        ],
    }),
]

sanity_check_commands = ['python -m skbio.test']

moduleclass = 'bio'