Build slims #280
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| name: Build slims (Matrix) | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| paths: | |
| - 'config.yaml' | |
| - '.github/workflows/build.yml' | |
| - './config/*' | |
| - './internal*' | |
| - './external*' | |
| - './scripts/build-workflow/*' | |
| push: | |
| paths: | |
| - 'config.yaml' | |
| - '.github/workflows/build.yml' | |
| - './config/*' | |
| - './internal*' | |
| - './external*' | |
| - './scripts/build-workflow/*' | |
| schedule: | |
| - cron: 1 0 1 1-12 * | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| slimmer: ${{ steps.config.outputs.slimmer }} | |
| robot: ${{ steps.config.outputs.robot }} | |
| robot_jar: ${{ steps.config.outputs.robot_jar }} | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| - name: Convert slimmer config to ROBOT term files | |
| run: bash scripts/build-workflow/slimmer2robot.sh | |
| - name: Extract config values | |
| id: config | |
| run: | | |
| echo $(java --version) | |
| config_file="config.yaml" | |
| robot_jar="" | |
| robot="" | |
| slimmer="" | |
| while IFS=":" read -r key value; do | |
| key=$(echo "$key" | tr -d '[:space:]') | |
| case "$key" in | |
| robot-jar) | |
| robot_jar=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| robot-wrapper) | |
| robot=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| slimmer) | |
| slimmer=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| esac | |
| done < "$config_file" | |
| echo SLIMMER: $slimmer | |
| echo ROBOT JAR: $robot_jar | |
| echo ROBOT WRAPPER: $robot | |
| echo "slimmer=${slimmer}" >> $GITHUB_OUTPUT | |
| echo "robot=${robot}" >> $GITHUB_OUTPUT | |
| echo "robot_jar=${robot_jar}" >> $GITHUB_OUTPUT | |
| - name: Authorize running build scripts | |
| run: chmod 755 scripts/build-workflow/*.sh | |
| build: | |
| needs: setup | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| ontology: [aopo, bao, bfo, bto, ccont, cheminf, chebi, chmo, clo, efo, envo, fabio, go, iao, ncit, npo, oae, obcs, obi, pato, sio, uberon, uo, msio] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| - name: get slimmer | |
| run: wget ${{ needs.setup.outputs.slimmer }} | |
| - name: get robot | |
| run: | | |
| wget ${{ needs.setup.outputs.robot }} | |
| wget ${{ needs.setup.outputs.robot_jar }} | |
| - name: build-${{ matrix.ontology }} | |
| run: | | |
| rm external-dev/${{ matrix.ontology }}-slim.owl | |
| bash scripts/build-workflow/build.sh ${{ matrix.ontology }} | |
| - name: Upload built ontology | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.ontology }}-owl | |
| path: external-dev/${{ matrix.ontology }}-slim.owl | |
| retention-days: 1 | |
| commit: | |
| needs: [setup, build] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| - name: Download all built ontologies | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: artifacts | |
| - name: Move artifacts to external-dev | |
| run: | | |
| mkdir -p external-dev | |
| find artifacts -name "*-slim.owl" -exec cp {} external-dev/ \; | |
| - name: Commit OWL files | |
| run: | | |
| if [[ "${{ github.ref_name }}" == *"merge"* ]]; then | |
| exit 0 | |
| fi | |
| git checkout "${{ github.ref_name }}" | |
| git pull | |
| git add -f external-dev/*-slim.owl | |
| git config --local user.email "action@github.com" | |
| git config --local user.name "Slimmer bot" | |
| # Check if there are changes to commit | |
| if git diff-index --quiet HEAD --; then | |
| echo "No changes to commit." | |
| else | |
| git commit -m "Actions - build updated" ./external-dev/*-slim.owl || true | |
| fi | |
| # Check if there are changes to push | |
| if [[ $(git rev-parse --abbrev-ref HEAD) == "${{ github.ref_name }}" ]]; then | |
| if [ -n "$(git cherry -v)" ]; then | |
| git push || echo "Push failed." | |
| else | |
| echo "No changes to push." | |
| fi | |
| fi |