fhir-to-logical-model-xform/moleculardefinition-example-allelesliced1+cds-Skibbidy1.ttl at main · fhircat/fhir-to-logical-model-xform · GitHub

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PREFIX cds: <http://cds.example.org/>
PREFIX emr1: <http://emrs.example.org/1/>

prefix fhir: <http://hl7.org/fhir/>
prefix loinc: <https://loinc.org/rdf/>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix xsd: <http://www.w3.org/2001/XMLSchema#>

# - resource -------------------------------------------------------------------

cds:Skibbidy1-test
  a cds:Rule ;
  cds:when <http://hl7.org/fhir/MolecularDefinition/example-allelesliced1> ;
  cds:do [
    cds:print "Check for skibbidy-hop disease."
  ] .

<http://hl7.org/fhir/MolecularDefinition/example-allelesliced1> a fhir:MolecularDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-allelesliced1"] ; #
  fhir:moleculeType [
     fhir:coding ( [
       fhir:system [ fhir:v "http://hl7.org/fhir/sequence-type"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "dna" ] ;
       fhir:display [ fhir:v "DNA Sequence" ]
     ] )
  ] ; #
  fhir:location ( [
     fhir:sequenceLocation [
       fhir:sequenceContext [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-lrg584> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-sequence-lrg584" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource: LRG_584" ]
       ] ;
       fhir:coordinateInterval [
         fhir:coordinateSystem [
           fhir:system [
             fhir:coding ( [
               a loinc:LA30100-4 ;
               fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
               fhir:code [ fhir:v "LA30100-4" ] ;
               fhir:display [ fhir:v "0-based interval counting" ]
             ] ) ;
             fhir:text [ fhir:v "0-based interval counting" ]
           ]
         ] ;
         fhir:start [
           a fhir:Quantity ;
           fhir:value [ fhir:v "5001"^^xsd:decimal ]
         ] ;
         fhir:end [
           a fhir:Quantity ;
           fhir:value [ fhir:v "97867"^^xsd:decimal ]
         ]
       ]
     ]
  ] ) ; #
  fhir:representation ( [
     fhir:focus [
       fhir:coding ( [
         fhir:code [ fhir:v "allele-state" ] ;
         fhir:display [ fhir:v "Allele State" ]
       ] )
     ] ;
     fhir:resolvable [
       fhir:link <http://hl7.org/fhir/DocumentReference/example-genomicFile-ng0083843> ;
       fhir:reference [ fhir:v "DocumentReference/example-genomicFile-ng0083843" ]
     ]
  ] [
     fhir:focus [
       fhir:coding ( [
         fhir:code [ fhir:v "context-state" ] ;
         fhir:display [ fhir:v "Context State" ]
       ] )
     ] ;
     fhir:relative [
       fhir:startingMolecule [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-lrg584> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-sequence-lrg584" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource: LRG_584" ]
       ] ;
       fhir:edit ( [
         fhir:coordinateInterval [
           fhir:coordinateSystem [
             fhir:system [
               fhir:coding ( [
                 a loinc:LA30100-4 ;
                 fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
                 fhir:code [ fhir:v "LA30100-4" ] ;
                 fhir:display [ fhir:v "0-based interval counting" ]
               ] ) ;
               fhir:text [ fhir:v "0-based interval counting" ]
             ]
           ]
         ] ;
         fhir:replacementMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-t> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence-t" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replacement Sequence Resource: T" ]
         ] ;
         fhir:replacedMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-c> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence-c" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replaced Sequence Resource: C" ]
         ]
       ] )
     ]
  ] ) . #

<http://hl7.org/fhir/MolecularDefinition/example-sequence-lrg584> a fhir:MolecularDefinition .

<http://hl7.org/fhir/DocumentReference/example-genomicFile-ng0083843> a fhir:DocumentReference .

<http://hl7.org/fhir/MolecularDefinition/example-sequence-t> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence-c> a fhir:MolecularDefinition .

# -------------------------------------------------------------------------------------