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Toolshed tests

Update Python dependencies #40968

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Update Python dependencies

Update Python dependencies #40968

Run time

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Job Run time
Test (3.9, v2, standalone)
33m 12s
Test (3.9, v1, galaxy_api)
26m 3s
Test (3.13, v1, standalone)
24m 12s
Test (3.9, v2, galaxy_api)
32m 27s
Test (3.13, v2, galaxy_api)
30m 40s
Test (3.9, v1, standalone)
25m 41s
Test (3.13, v1, galaxy_api)
22m 58s
Test (3.13, v2, standalone)
30m 44s
3h 45m 57s
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